mRNA_H-elongata_contig186276.5064.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186276.5064.1
Unique NamemRNA_H-elongata_contig186276.5064.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: A0A6H5L4K3_9PHAE (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K3_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.190e-25
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGKTCT 174
            +LWHQLTVAL EFVSDPAN E G GLVRLCTEF+A FEAK+NQLRFVQILC VGKTC+
Sbjct:   28 KLWHQLTVALLEFVSDPANAEAGGGLVRLCTEFVANFEAKMNQLRFVQILCAVGKTCS 85
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: A0A836CML5_9STRA (26S proteasome subunit like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.130e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGK 165
            +LWHQLTVA+ +FV D AN + GD  +RL T+FIA+FEA+INQL+  QILC V +
Sbjct:   29 KLWHQLTVAVYDFVQDDANSQ-GDSFIRLYTDFIAKFEARINQLKLAQILCAVAR 82
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: Q2F5J1_BOMMO (26S proteasome non-ATPase regulatory subunit 13 n=2 Tax=Bombyx TaxID=7090 RepID=Q2F5J1_BOMMO)

HSP 1 Score: 56.6 bits (135), Expect = 6.920e-8
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTV 159
            +LWHQLT+ LQEFV +PA ++ GD L++L   F+  FE+KIN L  V+I+  +
Sbjct:   39 KLWHQLTLKLQEFVKNPA-LQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHI 90
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: H9JNY3_BOMMO (26S proteasome non-ATPase regulatory subunit 13 n=1 Tax=Bombyx mori TaxID=7091 RepID=H9JNY3_BOMMO)

HSP 1 Score: 56.6 bits (135), Expect = 6.960e-8
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTV 159
            +LWHQLT+ LQEFV +PA ++ GD L++L   F+  FE+KIN L  V+I+  +
Sbjct:   39 KLWHQLTLKLQEFVKNPA-LQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHI 90
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: A0A2A4JHF9_HELVI (Uncharacterized protein (Fragment) n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JHF9_HELVI)

HSP 1 Score: 54.3 bits (129), Expect = 1.660e-7
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGKTCT 174
            +LWHQLT+ +QE V  P+ +++GD L+ L T F++ FE KIN L  V+I+  V K  T
Sbjct:   40 KLWHQLTLKIQELVEKPS-MQEGDHLITLYTNFVSFFENKINPLSLVEIIAHVIKQYT 96
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: H3AC76_LATCH (26S proteasome non-ATPase regulatory subunit 13 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AC76_LATCH)

HSP 1 Score: 55.5 bits (132), Expect = 1.770e-7
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGKTCT 174
            +LWHQLT+ +QEFV  P+ V  GDGL++L   FI+ FE +IN L  V+I+  V +  T
Sbjct:   34 KLWHQLTLRVQEFVQHPSFV-GGDGLIKLYENFISEFEHRINPLSLVEIVLHVVRQMT 90
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: A0A1Y1IL68_KLENI (26S proteasome regulatory subunit N9 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IL68_KLENI)

HSP 1 Score: 55.5 bits (132), Expect = 1.770e-7
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGK 165
            +LWHQLTV L++FVS  A ++ GDGL++L   FIA FE KIN L+  Q    V +
Sbjct:   31 KLWHQLTVKLEQFVSLAA-LQSGDGLIQLYHNFIADFETKINLLKLAQFAVVVSR 84
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: A0A401T601_CHIPU (26S proteasome non-ATPase regulatory subunit 13 (Fragment) n=5 Tax=Elasmobranchii TaxID=7778 RepID=A0A401T601_CHIPU)

HSP 1 Score: 55.1 bits (131), Expect = 2.400e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGKTCT 174
            +LWHQLTV LQ FV +P     GDGL++L   FI+ FE +IN L  V+I+  V +  T
Sbjct:   17 KLWHQLTVQLQNFVQNPC-FATGDGLIKLYENFISEFEHRINPLSLVEIVLHVVRQMT 73
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BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: A0A4W3GG39_CALMI (26S proteasome non-ATPase regulatory subunit 13 n=4 Tax=Chondrichthyes TaxID=7777 RepID=A0A4W3GG39_CALMI)

HSP 1 Score: 54.7 bits (130), Expect = 3.270e-7
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGKTCT 174
            RLWHQLT+ +Q FV +P     GDGL++L   FI+ FE ++N L  V+I+  V +  T
Sbjct:    5 RLWHQLTMRVQNFVQNPC-FASGDGLIKLYENFISEFEHRVNPLSLVEIVLNVVRQMT 61
[Close]
BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Match: A0A6P7TG92_OCTVU (26S proteasome non-ATPase regulatory subunit 13 n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7TG92_OCTVU)

HSP 1 Score: 54.7 bits (130), Expect = 3.310e-7
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQILCTVGK 165
            +LWHQLT+ LQ+FV +P     GDGL++L   FI+ FE +IN L  V+++  V K
Sbjct:   34 KLWHQLTLKLQDFVKEPI-FSSGDGLIKLYENFISDFEHRINSLALVELVIQVVK 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186276.5064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K3_9PHAE4.190e-2582.76PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CML5_9STRA3.130e-1360.0026S proteasome subunit like protein n=1 Tax=Tribon... [more]
Q2F5J1_BOMMO6.920e-849.0626S proteasome non-ATPase regulatory subunit 13 n=... [more]
H9JNY3_BOMMO6.960e-849.0626S proteasome non-ATPase regulatory subunit 13 n=... [more]
A0A2A4JHF9_HELVI1.660e-746.55Uncharacterized protein (Fragment) n=1 Tax=Helioth... [more]
H3AC76_LATCH1.770e-748.2826S proteasome non-ATPase regulatory subunit 13 n=... [more]
A0A1Y1IL68_KLENI1.770e-750.9126S proteasome regulatory subunit N9 n=1 Tax=Klebs... [more]
A0A401T601_CHIPU2.400e-748.2826S proteasome non-ATPase regulatory subunit 13 (F... [more]
A0A4W3GG39_CALMI3.270e-744.8326S proteasome non-ATPase regulatory subunit 13 n=... [more]
A0A6P7TG92_OCTVU3.310e-747.2726S proteasome non-ATPase regulatory subunit 13 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186276contigH-elongata_contig186276:1046..1219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue8.3e-21
Seed eggNOG ortholog2880.D7FUW8
Preferred namePSMD13
KEGG koko:K03039
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000280,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007049,GO:0007088,GO:0007127,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0022607,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051321,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061982,GO:0062033,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903046,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG2908@1,KOG2908@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.7430766-CDS-H-elongata_contig186276:1045..12191622930065.7430766-CDS-H-elongata_contig186276:1045..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186276 1046..1219 +
1691679267.6742043-CDS-H-elongata_contig186276:1045..12191691679267.6742043-CDS-H-elongata_contig186276:1045..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186276 1046..1219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186276.5064.1prot_H-elongata_contig186276.5064.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186276 1046..1219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186276.5064.1

>prot_H-elongata_contig186276.5064.1 ID=prot_H-elongata_contig186276.5064.1|Name=mRNA_H-elongata_contig186276.5064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
RLWHQLTVALQEFVSDPANVEDGDGLVRLCTEFIARFEAKINQLRFVQIL
CTVGKTCT
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mRNA from alignment at H-elongata_contig186276:1046..1219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186276.5064.1 ID=mRNA_H-elongata_contig186276.5064.1|Name=mRNA_H-elongata_contig186276.5064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig186276:1046..1219+ (Himanthalia elongata Himel1 dioecious)
AGGCTGTGGCATCAGCTCACGGTCGCTCTGCAGGAGTTTGTATCTGATCC
GGCGAACGTGGAGGACGGGGACGGTCTCGTGCGACTGTGCACGGAGTTCA
TCGCGAGGTTCGAGGCCAAAATCAACCAGCTTCGGTTCGTGCAGATTCTT
TGCACCGTGGGCAAGACGTGTACA
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Coding sequence (CDS) from alignment at H-elongata_contig186276:1046..1219+

>mRNA_H-elongata_contig186276.5064.1 ID=mRNA_H-elongata_contig186276.5064.1|Name=mRNA_H-elongata_contig186276.5064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig186276:1046..1219+ (Himanthalia elongata Himel1 dioecious)
AGGCTGTGGCATCAGCTCACGGTCGCTCTGCAGGAGTTTGTATCTGATCC
GGCGAACGTGGAGGACGGGGACGGTCTCGTGCGACTGTGCACGGAGTTCA
TCGCGAGGTTCGAGGCCAAAATCAACCAGCTTCGGTTCGTGCAGATTCTT
TGCACCGTGGGCAAGACGTGTACAAGGCTGTGGCATCAGCTCACGGTCGC
TCTGCAGGAGTTTGTATCTGATCCGGCGAACGTGGAGGACGGGGACGGTC
TCGTGCGACTGTGCACGGAGTTCATCGCGAGGTTCGAGGCCAAAATCAAC
CAGCTTCGGTTCGTGCAGATTCTTTGCACCGTGGGCAAGACGTGTACA
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