mRNA_H-elongata_contig18623.5061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18623.5061.1
Unique NamemRNA_H-elongata_contig18623.5061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18623.5061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18623contigH-elongata_contig18623:2667..3026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.5496619-UTR-H-elongata_contig18623:2666..26811622930065.5496619-UTR-H-elongata_contig18623:2666..2681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18623 2667..2681 +
1691679267.6056232-UTR-H-elongata_contig18623:2666..26811691679267.6056232-UTR-H-elongata_contig18623:2666..2681Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18623 2667..2681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.563365-CDS-H-elongata_contig18623:2681..30261622930065.563365-CDS-H-elongata_contig18623:2681..3026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18623 2682..3026 +
1691679267.6148121-CDS-H-elongata_contig18623:2681..30261691679267.6148121-CDS-H-elongata_contig18623:2681..3026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18623 2682..3026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18623.5061.1prot_H-elongata_contig18623.5061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18623 2682..3026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18623.5061.1

>prot_H-elongata_contig18623.5061.1 ID=prot_H-elongata_contig18623.5061.1|Name=mRNA_H-elongata_contig18623.5061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MENGQSIREYIAKAKSLATKVRYYGIGTSDHDISRRILNGLLSASAPEKR
NFALRTDFSLSDLEGGLIRVENLNKRLDGTDGSHALAAGFKARGGGQGRR
GSGGREGRSGGGGRG
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mRNA from alignment at H-elongata_contig18623:2667..3026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18623.5061.1 ID=mRNA_H-elongata_contig18623.5061.1|Name=mRNA_H-elongata_contig18623.5061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig18623:2667..3026+ (Himanthalia elongata Himel1 dioecious)
TTCAAGGAACTAACAATGGAAAATGGCCAATCTATAAGAGAATATATTGC
CAAGGCTAAATCCCTAGCTACCAAAGTGAGATATTACGGTATTGGGACGT
CCGACCATGATATTAGCCGTAGAATCCTAAATGGGCTTCTCTCCGCGTCT
GCCCCCGAAAAGCGTAACTTTGCACTTAGAACAGATTTTAGCCTGAGTGA
CCTGGAGGGTGGCCTGATCCGAGTGGAGAATCTGAACAAGCGTCTGGATG
GAACCGACGGCAGCCATGCCCTGGCCGCTGGTTTCAAAGCCAGAGGTGGC
GGCCAGGGCAGGCGAGGGTCCGGGGGTCGCGAGGGACGCAGTGGCGGTGG
AGGTCGAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig18623:2667..3026+

>mRNA_H-elongata_contig18623.5061.1 ID=mRNA_H-elongata_contig18623.5061.1|Name=mRNA_H-elongata_contig18623.5061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig18623:2667..3026+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAATGGCCAATCTATAAGAGAATATATTGCCAAGGCTAAATCCCT
AGCTACCAAAGTGAGATATTACGGTATTGGGACGTCCGACCATGATATTA
GCCGTAGAATCCTAAATGGGCTTCTCTCCGCGTCTGCCCCCGAAAAGCGT
AACTTTGCACTTAGAACAGATTTTAGCCTGAGTGACCTGGAGGGTGGCCT
GATCCGAGTGGAGAATCTGAACAAGCGTCTGGATGGAACCGACGGCAGCC
ATGCCCTGGCCGCTGGTTTCAAAGCCAGAGGTGGCGGCCAGGGCAGGCGA
GGGTCCGGGGGTCGCGAGGGACGCAGTGGCGGTGGAGGTCGAGGCATGGA
AAATGGCCAATCTATAAGAGAATATATTGCCAAGGCTAAATCCCTAGCTA
CCAAAGTGAGATATTACGGTATTGGGACGTCCGACCATGATATTAGCCGT
AGAATCCTAAATGGGCTTCTCTCCGCGTCTGCCCCCGAAAAGCGTAACTT
TGCACTTAGAACAGATTTTAGCCTGAGTGACCTGGAGGGTGGCCTGATCC
GAGTGGAGAATCTGAACAAGCGTCTGGATGGAACCGACGGCAGCCATGCC
CTGGCCGCTGGTTTCAAAGCCAGAGGTGGCGGCCAGGGCAGGCGAGGGTC
CGGGGGTCGCGAGGGACGCAGTGGCGGTGGAGGTCGAGGC
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