mRNA_H-elongata_contig106213.506.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106213.506.1
Unique NamemRNA_H-elongata_contig106213.506.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: D7FPC3_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.220e-26
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   13 EFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVENSLS 264
            +++  +E  YG SRA WFLG F+ + + L+ IGG+ LI NL+GF YPA ASFKAIDSPDAL S+Q LSYW IFGAF ++E S S
Sbjct:   29 KYMRQMEANYGGSRASWFLGLFSIVTVILYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWVIFGAFFTLETSFS 112          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: K3WMA9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMA9_GLOUD)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-15
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 LPHIEFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVEN 255
            L   + +  LEKQ GV + Y F        + LF++GG +L+VNLVGF YPA  SFKAI +P      QWL+YW ++  F+  E+
Sbjct:   15 LERYDKIVELEKQTGVDKFYIFCAGAVLSGILLFVVGGASLVVNLVGFLYPAYQSFKAISTPSTEDDTQWLTYWVVYAFFNITES 99          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: A0A6G0XKE2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKE2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.250e-15
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 LPHIEFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVEN 255
            L   E L  LEKQ GV + Y F        + LF++GG +LI NLVGF YPA  SFKA+++  +    QWL+YW ++ AF+  E 
Sbjct:   15 LERYEQLKELEKQTGVDKFYIFAAGAVVAGILLFVVGGASLISNLVGFVYPAYMSFKALNTDSSTDDTQWLTYWVVYSAFNLTEQ 99          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: A0A7S3KX69_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KX69_EUPCR)

HSP 1 Score: 74.3 bits (181), Expect = 3.710e-15
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 LPHIEFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVE 252
            L  I FL +LEK+ GV + Y   G      + +FL  G +L+ NLVGF YPA ASFKAI+S D      WL+YW ++  F+ +E
Sbjct:   29 LNKIPFLVDLEKKTGVPKFYMVAGILGATVILVFLNIGASLLTNLVGFLYPAYASFKAIESHDKDDDTMWLTYWVVYAFFNMIE 112          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: A0A1W0AAL7_9STRA (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1W0AAL7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.970e-15
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 LPHIEFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVEN 255
            L   + L  LE Q GV + Y FL       + LF+IGG +LI NLVGF YPA  SFKA+++ D+    QWL+YW ++ AF+  E 
Sbjct:   15 LDRYDKLKELEAQIGVEKFYIFLVGALIAGVLLFVIGGASLISNLVGFIYPAYMSFKALNTNDSNDDTQWLTYWVVYSAFNLTEQ 99          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: A0A7S2F8X6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8X6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.750e-14
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   85 IALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVENS 258
            + L L L+G   LI+NL+GF+YPAL SFKAIDS D+    QWLSYW I+G+FS +E++
Sbjct:   51 VLLILALLGASRLIINLLGFAYPALQSFKAIDSKDSKTDTQWLSYWIIYGSFSIIEHA 108          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: UPI0013962499 (receptor expression-enhancing protein 5-like n=1 Tax=Phoca vitulina TaxID=9720 RepID=UPI0013962499)

HSP 1 Score: 71.2 bits (173), Expect = 2.340e-13
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   13 EFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVE 252
            + L  LE + GV+R    LG    +AL L    G +L+ NL+GF YPA  S KAI+SP+     QWL+YW ++G FS+ E
Sbjct:   21 DLLAKLEGRTGVNRREIALGVIGLLALYLVFGYGASLLRNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSTAE 100          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: A0A4P9Z057_9FUNG (Protein YOP1 (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z057_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 2.800e-13
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 LPHIEFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVEN 255
            L  I  L  L++Q GV + Y   G    + + +F      L+ NL+GF YPA ASFKAI++       QWL+YW +FGAF+ VE+
Sbjct:   16 LSKIPQLVQLQEQTGVKKTYLVGGVAGVVFIMIFFNVAGGLLTNLLGFGYPAYASFKAIETASKDDDTQWLTYWTVFGAFNLVES 100          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: A0A0D2X1Y1_CAPO3 (Receptor accessory protein 5 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1Y1_CAPO3)

HSP 1 Score: 70.5 bits (171), Expect = 3.630e-13
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 LPHIEFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVE 252
            L    F+  L+ Q  V +AY  +G F  I LSL    G  L+ N+VGF YPA ASFKAI+S +     QWL+YW +F  FS +E
Sbjct:   16 LNKYPFMIRLQDQTKVPKAYLAIGGFLLILLSLSAGLGAQLVCNIVGFVYPAYASFKAIESTNKDDDTQWLTYWVVFAFFSLLE 99          
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Match: A0A1Z5K1S1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1S1_FISSO)

HSP 1 Score: 67.8 bits (164), Expect = 3.090e-12
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   19 LCNLEKQYGVSRAYWFLGTFATIALS-LFLIGGMTLIVNLVGFSYPALASFKAIDSPDALLSKQWLSYWAIFGAFSSVENSLS 264
            L +LE++ G  + Y+F+ T A  +LS L+L+GG+ L+V+L+GF YPA  SFK++DS  +    QWL+YW +F   S VEN LS
Sbjct:   33 LQDLEQKTGYHKVYFFV-TGAVASLSALWLLGGVKLLVDLLGFVYPAYMSFKSMDS-GSHDDTQWLTYWVVFSFLSIVENLLS 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106213.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPC3_ECTSI2.220e-2659.52C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
K3WMA9_GLOUD1.260e-1542.35Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0XKE2_9STRA2.250e-1543.53Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3KX69_EUPCR3.710e-1544.05Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A1W0AAL7_9STRA9.970e-1544.71Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A7S2F8X6_9STRA1.750e-1456.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI00139624992.340e-1343.75receptor expression-enhancing protein 5-like n=1 T... [more]
A0A4P9Z057_9FUNG2.800e-1341.18Protein YOP1 (Fragment) n=1 Tax=Syncephalis pseudo... [more]
A0A0D2X1Y1_CAPO33.630e-1345.24Receptor accessory protein 5 n=1 Tax=Capsaspora ow... [more]
A0A1Z5K1S1_FISSO3.090e-1246.99Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106213contigH-elongata_contig106213:1035..2142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D7FPC3
KEGG koko:K17279
EggNOG free text desc.endoplasmic reticulum tubular network membrane organization
EggNOG OGsCOG5052@1,KOG1725@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTB2/DP1/HVA22-related protein
Ec32 orthologEc-15_003930.1
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.4704354-CDS-H-elongata_contig106213:1034..11301622929593.4704354-CDS-H-elongata_contig106213:1034..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106213 1035..1130 -
1691679083.3295143-CDS-H-elongata_contig106213:1034..11301691679083.3295143-CDS-H-elongata_contig106213:1034..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106213 1035..1130 -
1622929593.4877555-CDS-H-elongata_contig106213:1971..21421622929593.4877555-CDS-H-elongata_contig106213:1971..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106213 1972..2142 -
1691679083.3487153-CDS-H-elongata_contig106213:1971..21421691679083.3487153-CDS-H-elongata_contig106213:1971..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106213 1972..2142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106213.506.1prot_H-elongata_contig106213.506.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106213 1035..2142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106213.506.1

>prot_H-elongata_contig106213.506.1 ID=prot_H-elongata_contig106213.506.1|Name=mRNA_H-elongata_contig106213.506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
LPHIEFLCNLEKQYGVSRAYWFLGTFATIALSLFLIGGMTLIVNLVGFSY
PALASFKAIDSPDALLSKQWLSYWAIFGAFSSVENSLS*
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mRNA from alignment at H-elongata_contig106213:1035..2142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106213.506.1 ID=mRNA_H-elongata_contig106213.506.1|Name=mRNA_H-elongata_contig106213.506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-elongata_contig106213:1035..2142- (Himanthalia elongata Himel1 dioecious)
TTACCCCATATAGAGTTCCTGTGTAACCTGGAGAAGCAATACGGCGTGTC CCGTGCGTACTGGTTCCTCGGCACTTTCGCGACGATTGCGCTTAGCTTGT TCCTGATCGGCGGGATGACGCTCATCGTCAACCTCGTGGGCTTCTCGTAC CCCGCCCTCGCCAGCTTTAAGGTTGAGCCACTCCATTTTGGTCTTTTGTT GATTATTGATGTTGCTTATTGCTGCCGTTGCTAAATTTTCGATGGGTTTT TTTGTATGTTTTTGTTTTTCTGAACCCCAAAGAGCGAAGGCTACGAGTAG CCCAGCTCCTTTTGCTGCCTCCAACAAGATCTGACAGCATTCAAAAACAG CATCCCGCCCTTCGGCGAAAATCACGTCGGAAATCAGTGTCGTGGATGAC CGCCGCTTGTTGCTCACCTTGTTGCTCACGATTGATTCGTCACGTCACGT CACTTATTTTGAGAGGAATGATAATGAGCGTGTGTGTGTGCTACACCGCA CGACGTTAGTGCCGACTCGTTTTTTGTGGCCTTGATTTTGCCGGGTCTGT ACCTTCTTGCTCTCCTTGTTGTTTTTTATTGTTGTTTGGTGGGCGGTCTT CAGCAAACCACGCGTACTCATTCAAAAAGAGGCGTTATTTTAAGACTCGG GCCCTGTATGTTTTGTGTGTACTATGGTGTCTTCCCCGTCCCGATGGTAT CCGCGCGCGTTTCCGGCAGCCCGCCCCCCCCCCACCCACCCTCGCGTACA CGGAATACGCCTGTGACGATTTTTCCTTATTAACGTCGTCTTATTTTATG ATCCAGGTACTGCCTGTCATAGAATCTTCGGTCACCCCCCCCCGACAGTG CTTGACCTACAATATCGGAGGCTGGGTTTGAGGGCAGCAGCTCCACAACC CCCATCCCCGCTCTGGTCGCTGAGTTTCCTAGCATTGCTTGTGGGGGCTT GCTCGGCGCGCGCTAATCATTTTATCCCGCATGAAACATGACCCGCGACG CGTGACACGCAGGCGATCGACTCCCCTGATGCCCTTCTGAGCAAGCAGTG GCTATCCTACTGGGCGATCTTCGGAGCCTTCTCCTCCGTCGAAAACAGTT TATCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig106213:1035..2142-

>mRNA_H-elongata_contig106213.506.1 ID=mRNA_H-elongata_contig106213.506.1|Name=mRNA_H-elongata_contig106213.506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig106213:1035..2142- (Himanthalia elongata Himel1 dioecious)
TTACCCCATATAGAGTTCCTGTGTAACCTGGAGAAGCAATACGGCGTGTC
CCGTGCGTACTGGTTCCTCGGCACTTTCGCGACGATTGCGCTTAGCTTGT
TCCTGATCGGCGGGATGACGCTCATCGTCAACCTCGTGGGCTTCTCGTAC
CCCGCCCTCGCCAGCTTTAAGTTACCCCATATAGAGTTCCTGTGTAACCT
GGAGAAGCAATACGGCGTGTCCCGTGCGTACTGGTTCCTCGGCACTTTCG
CGACGATTGCGCTTAGCTTGTTCCTGATCGGCGGGATGACGCTCATCGTC
AACCTCGTGGGCTTCTCGTACCCCGCCCTCGCCAGCTTTAAGGCGATCGA
CTCCCCTGATGCCCTTCTGAGCAAGCAGTGGCTATCCTACTGGGCGATCT
TCGGAGCCTTCTCCTCCGTCGAAAACAGTTTATCGTAAGCGATCGACTCC
CCTGATGCCCTTCTGAGCAAGCAGTGGCTATCCTACTGGGCGATCTTCGG
AGCCTTCTCCTCCGTCGAAAACAGTTTATCGTAA
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