mRNA_H-elongata_contig186135.5057.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186135.5057.1
Unique NamemRNA_H-elongata_contig186135.5057.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.970e-25
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 LPDKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            LPDKPYDLVVLGSGPGGEAAAVQAARLGA+VAVVE KKSFGGPTGLTSKAVREAAK+I
Sbjct:   63 LPDKPYDLVVLGSGPGGEAAAVQAARLGASVAVVEIKKSFGGPTGLTSKAVREAAKQI 120
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BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A836CAQ8_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.100e-19
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 LPDKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            +P+  YDLVVLGSGPGGEA A +AA+L A VAVVE K++FGGPTGLTSKAVREA K+I
Sbjct:   15 VPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQI 72
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BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: W7T4Z3_9STRA (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4Z3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.510e-18
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    7 DKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            D PYDL+VLGSGP GE A  +AA+LG  VA++E KK+FGGPTGLTSKAVREAAK I
Sbjct:   98 DTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRI 153
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BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.190e-17
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    7 DKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            D+P+DLVV+GSGPGGEAAA +AA LGA VAVVE K +FGGPTGLTSKAVREAA+ I
Sbjct:   88 DEPFDLVVVGSGPGGEAAAARAAALGAKVAVVERKAAFGGPTGLTSKAVREAAERI 143
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BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.650e-17
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:   10 KPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            +PYDL+V+G GPGGEAAAV AA+LGA+VA++E K SFGGPTGLTSKAVREA K I
Sbjct:   57 EPYDLLVIGCGPGGEAAAVNAAKLGASVALIEKKSSFGGPTGLTSKAVREATKRI 111
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BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: K8YWP5_NANGC (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWP5_NANGC)

HSP 1 Score: 82.0 bits (201), Expect = 6.350e-17
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    7 DKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            D PYDL+VLGSGP GE A  +AA+LG  VA++E KK+FGGPTGLTSKAVREAAK I
Sbjct:   79 DTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRI 134
[Close]
BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.880e-17
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    7 DKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            D PYDL+VLGSGP GE A  +AA+LG  VA++E KK+FGGPTGLTSKAVREAAK I
Sbjct:   98 DTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRI 153
[Close]
BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A7S1NVB4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NVB4_9EUGL)

HSP 1 Score: 80.9 bits (198), Expect = 9.780e-17
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:   16 YDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            YDLVV+G+GPGGEA AV A+R GA VA++E++++FGGPTGLTSKAVREAAK+I
Sbjct:  187 YDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQI 239
[Close]
BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL)

HSP 1 Score: 80.9 bits (198), Expect = 2.010e-16
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:   16 YDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKAVREAAKEI 174
            YDLVV+G+GPGGEA AV A+R GA VA++E++++FGGPTGLTSKAVREAAK+I
Sbjct:  187 YDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQI 239
[Close]
BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Match: A0A7S1TRI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.730e-10
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    7 DKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFG 123
            D+PYDLVV+GSGPGGEAAA +AA+LGA VAVV+ K++FG
Sbjct:   89 DEPYDLVVIGSGPGGEAAATRAAQLGARVAVVDRKRAFG 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186135.5057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0D3_9PHAE7.970e-2594.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAQ8_9STRA2.100e-1974.14Pyr_redox_2 domain-containing protein (Fragment) n... [more]
W7T4Z3_9STRA9.510e-1873.21Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
A0A7R9U251_9STRA1.190e-1778.57Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2Y1R6_9STRA1.650e-1776.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K8YWP5_NANGC6.350e-1773.21Soluble pyridine nucleotide transhydrogenase (Frag... [more]
A0A4D9CSA5_9STRA7.880e-1773.21Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1NVB4_9EUGL9.780e-1773.58Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A6U8N6N8_9EUGL2.010e-1673.58Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1TRI9_9STRA8.730e-1074.36Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186135contigH-elongata_contig186135:417..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog159749.K0TAU2
KEGG rclassRC00001
KEGG koko:K00322
KEGG ReactionR00112
KEGG Pathwayko00760,ko01100,map00760,map01100
EggNOG free text desc.Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
EggNOG OGs2XB34@2836,COG1249@1,KOG1335@2759
EC1.6.1.1
COG Functional cat.C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.9038122-CDS-H-elongata_contig186135:416..5901622930064.9038122-CDS-H-elongata_contig186135:416..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186135 417..590 +
1691679267.2877235-CDS-H-elongata_contig186135:416..5901691679267.2877235-CDS-H-elongata_contig186135:416..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186135 417..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186135.5057.1prot_H-elongata_contig186135.5057.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186135 417..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186135.5057.1

>prot_H-elongata_contig186135.5057.1 ID=prot_H-elongata_contig186135.5057.1|Name=mRNA_H-elongata_contig186135.5057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
LPDKPYDLVVLGSGPGGEAAAVQAARLGATVAVVETKKSFGGPTGLTSKA
VREAAKEI
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mRNA from alignment at H-elongata_contig186135:417..590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186135.5057.1 ID=mRNA_H-elongata_contig186135.5057.1|Name=mRNA_H-elongata_contig186135.5057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig186135:417..590+ (Himanthalia elongata Himel1 dioecious)
CTCCCCGACAAGCCATACGATCTAGTGGTGCTAGGATCTGGTCCCGGGGG
CGAGGCGGCGGCGGTGCAGGCGGCACGGCTTGGGGCCACGGTGGCCGTGG
TGGAGACAAAGAAGAGCTTTGGGGGGCCGACGGGGCTAACGTCTAAGGCT
GTTCGAGAGGCGGCGAAGGAGATC
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Coding sequence (CDS) from alignment at H-elongata_contig186135:417..590+

>mRNA_H-elongata_contig186135.5057.1 ID=mRNA_H-elongata_contig186135.5057.1|Name=mRNA_H-elongata_contig186135.5057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig186135:417..590+ (Himanthalia elongata Himel1 dioecious)
CTCCCCGACAAGCCATACGATCTAGTGGTGCTAGGATCTGGTCCCGGGGG
CGAGGCGGCGGCGGTGCAGGCGGCACGGCTTGGGGCCACGGTGGCCGTGG
TGGAGACAAAGAAGAGCTTTGGGGGGCCGACGGGGCTAACGTCTAAGGCT
GTTCGAGAGGCGGCGAAGGAGATCCTCCCCGACAAGCCATACGATCTAGT
GGTGCTAGGATCTGGTCCCGGGGGCGAGGCGGCGGCGGTGCAGGCGGCAC
GGCTTGGGGCCACGGTGGCCGTGGTGGAGACAAAGAAGAGCTTTGGGGGG
CCGACGGGGCTAACGTCTAAGGCTGTTCGAGAGGCGGCGAAGGAGATC
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