mRNA_H-elongata_contig18602.5053.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 226 bits (576), Expect = 1.210e-68 Identity = 108/176 (61.36%), Postives = 133/176 (75.57%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVDETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCY---GGSFGLRNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCEDGNCELIG 519
VRLK +V+NA++ NTI +CG+HD+ F S DKNGEGVYIGTSS QW + D CN N+V GN IST+GNECV+IKEG++GN +E+NICS QLD SGCY G R N+ T+CMGAGVRLGGW+VDG+ +G GN VYGND EG++KV QGD+CGNTCEDG+C L+G
Sbjct: 172 VRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGE-DTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGSCSLVG 346
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 221 bits (563), Expect = 1.620e-68 Identity = 106/176 (60.23%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVDETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCY---GGSFGLRNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCEDGNCELIG 519
VRLK +VVNA++ NTI +CG+HD+ F SEDKNGEGVYIGTSS QW + D CNGNVV N+IST+GNECV+IKEGS+GN +E+N CS+QLD SGCY G R N+ + C GAGVRLGGW+VDG+ +G N VYGND + G++KV QGD+CGNTCE+G+C L G
Sbjct: 172 VRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGE-DTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGSCSLTG 346
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 215 bits (547), Expect = 2.010e-64 Identity = 100/176 (56.82%), Postives = 129/176 (73.30%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVDETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCY---GGSFGLRNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCEDGNCELIG 519
VRLK V NA+IF NTI +CGIHD+ FES D NG+GV IGTSS++W D D+C N+V GN+I T+ NECV++KEG+ GN +E+N+C NQLD NSGCY G RNN ++C+GAGVRLGGW+VDG+ +G GN VY ND D G++K+ +GQG +CGNTC +C+LIG
Sbjct: 133 VRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIG 308
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 186 bits (473), Expect = 1.520e-55 Identity = 92/170 (54.12%), Postives = 115/170 (67.65%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVDETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGGSFG---LRNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCEDG 501
VRLKS +V A I DN IQDCG+ DF + + KNGEG+Y+GTSS QW D PD CN N + GN I+ NGNECV+IKEGSTG VEEN CS QLD++SGC+G R N A++C+G GVR+GGW+VDG+ +GQ N +Y N G + QG VCGN+C+ G
Sbjct: 145 VRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDG-PDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGG 313
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: A0A6H5L3G3_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G3_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.830e-41 Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWV-----DETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGGSFGLRNNIATNCM----GAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGN 486
+RL+ +V NAE++ N I DCGI+DF+ + + KNGEGVY+GTSS QW D+ PD+C GN+++GN I T GNE +++KEG+ +E N Q D +SG G S G R+ I N + GAGVRLGG VDG +G+ N VYGN + DC ++KV + QG +C N
Sbjct: 172 IRLRDHVTNAEVYSNHITDCGIYDFREDGDGKNGEGVYVGTSSKQWDSDKNWDDVPDVCMGNIIRGNYIRTRGNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIG-SRGDRSIIRYNHIEDTDGAGVRLGGHTVDGIEYGKNNQVYGNTMVDCRHSAVKVMVDPQGQICNN 341
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 145 bits (367), Expect = 3.390e-39 Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVDET-----PDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCY---GGSFGLRNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCED 498
VRL+ V AEIFDNT +CG++DF+F + KNGE +Y+GTSSNQW D PD N N + N TNGNECV+IKEG+ N VE NICS Q D NS + G R N++ + GAGVRLGG VDG +G N VYGN +++ ++ +K+ Q VCGN D
Sbjct: 174 VRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSD 347
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM) HSP 1 Score: 143 bits (361), Expect = 3.190e-38 Identity = 84/174 (48.28%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVD-----ETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYG--GSFGL-RNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCED 498
VRL+ +V AEIF NT +CG +DFQF+ KNGE +YIGTSS QW D PD N N V N T GNECV+IKEG+ N VE NIC+ Q D SG + G + + R N++ + GAG+R+GG V+G +G N VYGN IFD IK+ T Q VCGN+ D
Sbjct: 180 VRLRYHVTRAEIFGNTFYNCGAYDFQFDGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTRGNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVNGRQYGVFNEVYGNKIFDNDNSGIKIMTYPQRYVCGNSMTD 353
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 147 bits (372), Expect = 5.360e-38 Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWV-----DETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGGSFGLRNNIATNCM----GAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGN 486
+RL+ +V AE++ N I DCGI+D++ + + KNGEGVY+GTSSNQW D+ PD+C GN+++ N I T GNE +++KEGS +E N Q D +SG G S G R+ I N + GAGVRLGG VDG +G+ N VYGN + DC ++KV + QG +C N
Sbjct: 178 IRLRDHVTYAEVYSNYIIDCGIYDYREDGDGKNGEGVYVGTSSNQWDSDNNWDDVPDVCMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIG-SRGDRSIIRYNHIEDTDGAGVRLGGHTVDGIEYGKNNQVYGNTMVDCRHSAVKVMVDPQGQICDN 347
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: A0A261GV77_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GV77_9GAMM) HSP 1 Score: 138 bits (347), Expect = 3.280e-36 Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQW-----VDETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCY---GGSFGLRNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCED 498
VR++ V AEIF NT +CG+ DFQF KNGE +Y+GT+ QW + PD + N + N TNGNECV+IK+GS N VE NIC+ Q D NSG + G LRNNI+ GAG+R+GG V+GY +G N VY N FD ++K+ Q +VCGN D
Sbjct: 176 VRIRYFVSEAEIFGNTFYNCGVLDFQFNDGTKNGEAIYVGTAPGQWGNGKNLTSDPDHSHHNWIHDNSFLTNGNECVDIKDGSEYNLVENNICTGQRDPNSGGFNIQGDRNILRNNISFANNGAGIRIGGHMVNGYQYGVENDVYSNVFFDNGNAAVKMMAYPQSNVCGNDSYD 349
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC) HSP 1 Score: 142 bits (357), Expect = 3.920e-36 Identity = 79/181 (43.65%), Postives = 104/181 (57.46%), Query Frame = 1
Query: 1 VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVD-----ETPDICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGG---SFGLRNNIATNCMGAGVRLGGWDVDGYAHGQGNHVYGNDIFDCSEGSIKVETEGQGDVCGNTCEDGNCELIG 519
+RL+S V +AE+ N I+ CG HD+ F+ KNGE +Y+GTSSNQW D PD + N+I T NECV++KEGST VE N CSNQLD NS + R N +NC GAG+R+GG +DG +G+ N YGN + + + +IKVET Q C N C C + G
Sbjct: 177 IRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQWNDGKNSKSGPDKTKYIWIHDNVIDTQANECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGENNEAYGNVMRNNAYSAIKVETGKQHVFCQNDCGKEGCTVKG 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18602.5053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18602.5053.1 >prot_H-elongata_contig18602.5053.1 ID=prot_H-elongata_contig18602.5053.1|Name=mRNA_H-elongata_contig18602.5053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp VRLKSNVVNAEIFDNTIQDCGIHDFQFESEDKNGEGVYIGTSSNQWVDETback to top mRNA from alignment at H-elongata_contig18602:5535..7216- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18602.5053.1 ID=mRNA_H-elongata_contig18602.5053.1|Name=mRNA_H-elongata_contig18602.5053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1682bp|location=Sequence derived from alignment at H-elongata_contig18602:5535..7216- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18602:5535..7216- >mRNA_H-elongata_contig18602.5053.1 ID=mRNA_H-elongata_contig18602.5053.1|Name=mRNA_H-elongata_contig18602.5053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig18602:5535..7216- (Himanthalia elongata Himel1 dioecious)back to top |