mRNA_H-elongata_contig106209.505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106209.505.1
Unique NamemRNA_H-elongata_contig106209.505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: UPI001B7DB75D (protein mono-ADP-ribosyltransferase TIPARP-like isoform X1 n=3 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7DB75D)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-9
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRY 150
            E  LFHG+ + A+PSIC   FD R++G ++G  +GQG YFA+NA+ + RY
Sbjct:  393 EMLLFHGTTKEAVPSICKNNFDPRVSGRQHGSTYGQGTYFAKNASCSARY 442
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A662YL91_ACIRT (TCDD-inducible poly [ADP-ribose] polymerase n=2 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A662YL91_ACIRT)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   10 LFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRY 150
            LFHG+ E A+ SIC   FD R++G ++G  +GQG YFA+NA+ + RY
Sbjct:  349 LFHGTTEEAVQSICKNNFDPRVSGQKHGSNYGQGTYFAKNASCSARY 395
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A8J1JC07_XENTR (protein mono-ADP-ribosyltransferase TIPARP n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J1JC07_XENTR)

HSP 1 Score: 57.8 bits (138), Expect = 2.210e-8
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRYMK 156
            E++LFHG++   + +IC   FD R++G +NG  +GQGCYFA++A+ + RY K
Sbjct:  360 ERHLFHGTEHTLVEAICRQNFDPRVSG-KNGTIYGQGCYFAKDASYSHRYAK 410
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A812Q850_9DINO (Poly [ADP-ribose] polymerase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q850_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 5.650e-8
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRYMK 156
            E  LFHG+ E  +  I + GFD RLAG   G  FGQG YFA NA++  RY +
Sbjct:  293 EVLLFHGTTEEKLAGILSSGFDPRLAGMGTGAMFGQGTYFAHNASKCFRYAR 344
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A1L8H3P8_XENLA (protein mono-ADP-ribosyltransferase TIPARP isoform X1 n=2 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8H3P8_XENLA)

HSP 1 Score: 56.6 bits (135), Expect = 5.660e-8
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRYMK 156
            E++LFHG++   + +IC   FD R++G +NG  +GQGCYFA++A+ + RY K
Sbjct:  360 ERHLFHGTEHILVEAICRHNFDPRVSG-KNGTIYGQGCYFAKDASYSHRYAK 410
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A812N4H0_SYMMI (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812N4H0_SYMMI)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-7
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRYMK 156
            E  LFHG+ E  +  I   GFD RLAG   G  FGQG YFA NA++  RY +
Sbjct:  255 EVLLFHGTTEEKLTGILRSGFDPRLAGMGTGAMFGQGSYFAHNASKCFRYAR 306
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A812JB18_9DINO (Poly [ADP-ribose] polymerase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812JB18_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-7
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRYMK 156
            E  LFHG+ E  +  I   GFD RLAG   G  FGQG YFA NA++  RY +
Sbjct:  412 EVLLFHGTTEEKLTGILRSGFDPRLAGMGTGAMFGQGSYFAHNASKCFRYAR 463
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: UPI0006D92E26 (TCDD-inducible poly [ADP-ribose] polymerase-like n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D92E26)

HSP 1 Score: 55.5 bits (132), Expect = 1.450e-7
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRY 150
            E+ LFHG++E+A+ SIC + FD R+AG +NG  +GQG YFA++A  +  Y
Sbjct:  342 ERNLFHGTEEDALDSICQMNFDHRVAG-KNGTVYGQGSYFARDARYSHGY 390
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A3P8YUC5_ESOLU (Poly(ADP-ribose) polymerase family member 12 n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P8YUC5_ESOLU)

HSP 1 Score: 55.1 bits (131), Expect = 1.990e-7
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRYMKS 159
            E++LFHG+D++ I +IC   FD R  G  NG  +GQG YFA++A+ + +Y+KS
Sbjct:  554 ERHLFHGTDQSIIEAICEQNFDWRACGV-NGTVYGQGSYFARDASYSHKYIKS 605
[Close]
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Match: A0A6F9AGP8_9TELE (Poly [ADP-ribose] polymerase (Fragment) n=2 Tax=Coregonus TaxID=27772 RepID=A0A6F9AGP8_9TELE)

HSP 1 Score: 52.8 bits (125), Expect = 2.720e-7
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRYMKS 159
            E+ LFHG+DE+ I +IC   FD R  G  NG  +GQG YFA++A+ +  Y+KS
Sbjct:   12 ERNLFHGTDESIIDAICEQNFDWRTCGV-NGTPYGQGSYFARDASFSNNYIKS 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106209.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001B7DB75D1.330e-950.00protein mono-ADP-ribosyltransferase TIPARP-like is... [more]
A0A662YL91_ACIRT1.620e-851.06TCDD-inducible poly [ADP-ribose] polymerase n=2 Ta... [more]
A0A8J1JC07_XENTR2.210e-846.15protein mono-ADP-ribosyltransferase TIPARP n=1 Tax... [more]
A0A812Q850_9DINO5.650e-850.00Poly [ADP-ribose] polymerase n=1 Tax=Symbiodinium ... [more]
A0A1L8H3P8_XENLA5.660e-846.15protein mono-ADP-ribosyltransferase TIPARP isoform... [more]
A0A812N4H0_SYMMI1.020e-750.00Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Sy... [more]
A0A812JB18_9DINO1.060e-750.00Poly [ADP-ribose] polymerase n=1 Tax=Symbiodinium ... [more]
UPI0006D92E261.450e-750.00TCDD-inducible poly [ADP-ribose] polymerase-like n... [more]
A0A3P8YUC5_ESOLU1.990e-747.17Poly(ADP-ribose) polymerase family member 12 n=3 T... [more]
A0A6F9AGP8_9TELE2.720e-749.06Poly [ADP-ribose] polymerase (Fragment) n=2 Tax=Co... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106209contigH-elongata_contig106209:1206..2045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3e-09
Seed eggNOG ortholog2880.D7FVZ9
KEGG koko:K15261
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005911,GO:0008150,GO:0009506,GO:0010035,GO:0010038,GO:0016740,GO:0016757,GO:0030054,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0050896,GO:0055044
EggNOG free text desc.ADP-D-ribose binding
EggNOG OGsCOG2110@1,KOG2633@2759
EC2.4.2.30
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.3836613-CDS-H-elongata_contig106209:1205..12681622929593.3836613-CDS-H-elongata_contig106209:1205..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106209 1206..1268 -
1691679083.3081567-CDS-H-elongata_contig106209:1205..12681691679083.3081567-CDS-H-elongata_contig106209:1205..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106209 1206..1268 -
1622929593.4038134-CDS-H-elongata_contig106209:1949..20451622929593.4038134-CDS-H-elongata_contig106209:1949..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106209 1950..2045 -
1691679083.3194425-CDS-H-elongata_contig106209:1949..20451691679083.3194425-CDS-H-elongata_contig106209:1949..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106209 1950..2045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106209.505.1prot_H-elongata_contig106209.505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106209 1206..2045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106209.505.1

>prot_H-elongata_contig106209.505.1 ID=prot_H-elongata_contig106209.505.1|Name=mRNA_H-elongata_contig106209.505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
EQYLFHGSDENAIPSICTIGFDKRLAGSRNGKAFGQGCYFAQNATQAVRY
MKS
back to top

mRNA from alignment at H-elongata_contig106209:1206..2045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106209.505.1 ID=mRNA_H-elongata_contig106209.505.1|Name=mRNA_H-elongata_contig106209.505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig106209:1206..2045- (Himanthalia elongata Himel1 dioecious)
GAGCAATACCTCTTCCATGGCTCCGACGAAAATGCGATACCCTCGATCTG
CACGATAGGTTTCGATAAGCGATTGGCTGGGTCTAGAAATGGAAAAGTGA
GATAGTGTGGGATGTTTTTAGTACATGACACCCATCGGGGTTAGGGCAGA
GGTCTAGTCAACGCGGTACAAGCCGAGACGTTGACATCCTCTATAAACAT
GCGAACCCTTTCCGGCATTCCTCCGACAAAGAGGTATCTCCGGGGAGGTA
ATTAACTTGTATCCGTGCCGCCCAGCACACCATCAGTTTTACTTGATAAT
TCTCTCTGTGTGCAGGCCCTAATACATTATGTCTTTGTAGCTATTTTCAT
GTATTTTGTCTGACGTACTGGTAGCACGTTACGACGTCAAGTCGCCAGTC
AGCACTGACTAGCTGTTGTTATCGATACAAAATACATCTAGCAAAGCTAA
AGTAGGGGGGTGATCACACCCCAGATTTCATACCAAGGTCACGAACTTTC
AACTTTGCCTTGCCATCCATGTCCCATCAAATATATATACAACGCCGTAC
TGTTAGAATTTCCTTACTGCCCTTCCCACCCATGCCTGAATAACTGATGA
ACGTAAGAGTTTGTTCCTTATATCTAAACTAAATGTATGTGTGGCTTGAT
GACGAACTTCTCGTCTCGCCGTTTACTTCCCTAATTGAGAAGTTTGTTAC
TTGTAGTGCGAAGGTATCTCTCCCCCGCAATCATGCCCAATGCAATTTTT
GTTCTTCGCGTTTTTTTGCTTCCGCAGGCGTTTGGGCAGGGCTGCTACTT
CGCCCAAAACGCTACCCAGGCCGTGAGATACATGAAGTCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig106209:1206..2045-

>mRNA_H-elongata_contig106209.505.1 ID=mRNA_H-elongata_contig106209.505.1|Name=mRNA_H-elongata_contig106209.505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig106209:1206..2045- (Himanthalia elongata Himel1 dioecious)
GAGCAATACCTCTTCCATGGCTCCGACGAAAATGCGATACCCTCGATCTG
CACGATAGGTTTCGATAAGCGATTGGCTGGGTCTAGAAATGGAAAAGAGC
AATACCTCTTCCATGGCTCCGACGAAAATGCGATACCCTCGATCTGCACG
ATAGGTTTCGATAAGCGATTGGCTGGGTCTAGAAATGGAAAAGCGTTTGG
GCAGGGCTGCTACTTCGCCCAAAACGCTACCCAGGCCGTGAGATACATGA
AGTCGGCGTTTGGGCAGGGCTGCTACTTCGCCCAAAACGCTACCCAGGCC
GTGAGATACATGAAGTCG
back to top