prot_H-elongata_contig185968.5047.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig185968.5047.1
Unique Nameprot_H-elongata_contig185968.5047.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
[Close]
BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Match: D7G130_ECTSI (Tudor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G130_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.300e-51
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0 
Query:    1 VIKNVSEDGQDFEVTYMGYGSEGSATITTLRQITRSSRPVAAAAAVKGLECKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQKRAVVSQAK 102
            VI +VSEDGQDF VTYMGYG+EG+ATITTLRQITRS RPVAAAAAVKGLEC+ALY+GDG YYDC IQEVTANGYK++FPAYGNVEEVPLEYLQK+  +S AK
Sbjct:  141 VIDSVSEDGQDFGVTYMGYGTEGTATITTLRQITRSPRPVAAAAAVKGLECRALYVGDGTYYDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAK 242
[Close]
BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Match: A0A6H5JFR7_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.870e-51
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0 
Query:    1 VIKNVSEDGQDFEVTYMGYGSEGSATITTLRQITRSSRPVAAAAAVKGLECKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQKRAVVSQAK 102
            VI +VSEDGQDF VTYMGYG+EG+ATITTLRQITRS RPVAAAAAVKGLEC+ALY+GDG YYDC IQEVTANGYK++FPAYGNVEEVPLEYLQK+  +S AK
Sbjct:  141 VIDSVSEDGQDFGVTYMGYGTEGTATITTLRQITRSPRPVAAAAAVKGLECRALYVGDGTYYDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAK 242
[Close]
BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Match: A0A7S2USF4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USF4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.590e-13
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 0 
Query:    1 VIKNVSEDGQDFEVTYMGYGSEGSATITT-----LRQITRSSRPVAAAAAVKG-----LECKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQ 93
            V+ + +  G    V Y+G+G++ +  +T      L+    ++RP+     V G      +C A Y GDG YY+  +QEVT  G+KV F AYGN EEVPLEYLQ
Sbjct:   24 VVVSAAGPGNVATVHYIGHGADDTIDLTVSKLRVLKPPREATRPITNVLEVHGGIGPGFQCLARYSGDGQYYEATVQEVTVYGFKVAFTAYGNAEEVPLEYLQ 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185968.5047.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G130_ECTSI1.300e-5183.33Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFR7_9PHAE1.870e-5183.33Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2USF4_9STRA2.590e-1339.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 42..97
e-value: 2.8E-10
score: 41.7
NoneNo IPR availablePANTHERPTHR13681:SF26SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30coord: 48..95
NoneNo IPR availablePANTHERPTHR13681FAMILY NOT NAMEDcoord: 48..95
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 46..93
IPR002999Tudor domainPROSITEPS50304TUDORcoord: 44..102
score: 11.591

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185968contigH-elongata_contig185968:150..837 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185968.5047.1mRNA_H-elongata_contig185968.5047.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig185968 150..837 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig185968.5047.1 ID=prot_H-elongata_contig185968.5047.1|Name=mRNA_H-elongata_contig185968.5047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
VIKNVSEDGQDFEVTYMGYGSEGSATITTLRQITRSSRPVAAAAAVKGLE
CKALYMGDGVYYDCEIQEVTANGYKVIFPAYGNVEEVPLEYLQKRAVVSQ
AK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002999Tudor