mRNA_H-elongata_contig18594.5045.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18594.5045.1
Unique NamemRNA_H-elongata_contig18594.5045.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18594.5045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18594contigH-elongata_contig18594:1912..2358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size448
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.6406217-UTR-H-elongata_contig18594:1911..20311622930063.6406217-UTR-H-elongata_contig18594:1911..2031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18594 1912..2031 +
1691679266.8224015-UTR-H-elongata_contig18594:1911..20311691679266.8224015-UTR-H-elongata_contig18594:1911..2031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18594 1912..2031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.655887-CDS-H-elongata_contig18594:2031..23581622930063.655887-CDS-H-elongata_contig18594:2031..2358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18594 2032..2358 +
1691679266.8354683-CDS-H-elongata_contig18594:2031..23581691679266.8354683-CDS-H-elongata_contig18594:2031..2358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18594 2032..2358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18594.5045.1prot_H-elongata_contig18594.5045.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18594 2032..2358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18594.5045.1

>prot_H-elongata_contig18594.5045.1 ID=prot_H-elongata_contig18594.5045.1|Name=mRNA_H-elongata_contig18594.5045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MLHTFTSYLMTALESLSCVSPARTLHSTAPHGRPREKCMYYFTGAIIDRS
LQHKQNMETAAHALTPRADHGDHDDYETPCAHVTSGNQRTVCSRPNQRDT
SAQRDATLQ
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mRNA from alignment at H-elongata_contig18594:1912..2358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18594.5045.1 ID=mRNA_H-elongata_contig18594.5045.1|Name=mRNA_H-elongata_contig18594.5045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig18594:1912..2358+ (Himanthalia elongata Himel1 dioecious)
GGCCTTTTTCATGGGTGAGCGGCGCCTTGCGTGGATAAAACGTACGACGG
TAATTAGTTGGACCGCCTTTATATCGCGGAATGCTCCCTAGAATTGGAGC
TCGCCGGTTCACCGGCGGCTATGCTACATACATTTACATCATACTTGATG
ACAGCTCTCGAATCTTTGTCATGCGTTTCTCCCGCTCGCACCCTTCACAG
CACCGCCCCCCACGGGCGCCCGCGAGAAAAATGTATGTACTACTTCACGG
GCGCCATCATCGATCGGTCACTGCAGCACAAACAGAACATGGAAACAGCA
GCTCATGCTCTAACCCCACGGGCTGATCATGGCGATCATGACGATTATGA
AACGCCCTGCGCACATGTGACCAGTGGCAATCAACGCACCGTTTGTTCGA
GACCAAACCAGAGAGATACGAGTGCCCAACGAGACGCCACGCTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig18594:1912..2358+

>mRNA_H-elongata_contig18594.5045.1 ID=mRNA_H-elongata_contig18594.5045.1|Name=mRNA_H-elongata_contig18594.5045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig18594:1912..2358+ (Himanthalia elongata Himel1 dioecious)
ATGCTACATACATTTACATCATACTTGATGACAGCTCTCGAATCTTTGTC
ATGCGTTTCTCCCGCTCGCACCCTTCACAGCACCGCCCCCCACGGGCGCC
CGCGAGAAAAATGTATGTACTACTTCACGGGCGCCATCATCGATCGGTCA
CTGCAGCACAAACAGAACATGGAAACAGCAGCTCATGCTCTAACCCCACG
GGCTGATCATGGCGATCATGACGATTATGAAACGCCCTGCGCACATGTGA
CCAGTGGCAATCAACGCACCGTTTGTTCGAGACCAAACCAGAGAGATACG
AGTGCCCAACGAGACGCCACGCTGCAGATGCTACATACATTTACATCATA
CTTGATGACAGCTCTCGAATCTTTGTCATGCGTTTCTCCCGCTCGCACCC
TTCACAGCACCGCCCCCCACGGGCGCCCGCGAGAAAAATGTATGTACTAC
TTCACGGGCGCCATCATCGATCGGTCACTGCAGCACAAACAGAACATGGA
AACAGCAGCTCATGCTCTAACCCCACGGGCTGATCATGGCGATCATGACG
ATTATGAAACGCCCTGCGCACATGTGACCAGTGGCAATCAACGCACCGTT
TGTTCGAGACCAAACCAGAGAGATACGAGTGCCCAACGAGACGCCACGCT
GCAG
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