mRNA_H-elongata_contig185914.5043.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185914.5043.1
Unique NamemRNA_H-elongata_contig185914.5043.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.710e-19
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE I    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   44 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 133
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.290e-19
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.180e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.370e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.510e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5JUC3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:  142 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 231
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   94 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 183
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.490e-18
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY   +SG     KGK G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.000e-18
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIVNKAGKDDIEIECISARLLKARISI-KSIFVTFVIAYAPTE 267
            DVIGLQET+R+G   I   GY + +SG     K K+G HGVG+AIKE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE
Sbjct:  692 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTE 781
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185914.5043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE2.710e-1951.11Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JMM5_9PHAE7.290e-1950.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE1.180e-1850.00Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KTK0_9PHAE2.370e-1850.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM04_9PHAE2.510e-1850.00Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JUC3_9PHAE2.900e-1850.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGX2_9PHAE2.900e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7A7_9PHAE2.900e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ63_9PHAE3.490e-1851.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE4.000e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185914contigH-elongata_contig185914:213..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.5137444-CDS-H-elongata_contig185914:212..5331622930063.5137444-CDS-H-elongata_contig185914:212..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185914 213..533 -
1691679266.7846305-CDS-H-elongata_contig185914:212..5331691679266.7846305-CDS-H-elongata_contig185914:212..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185914 213..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185914.5043.1prot_H-elongata_contig185914.5043.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185914 213..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185914.5043.1

>prot_H-elongata_contig185914.5043.1 ID=prot_H-elongata_contig185914.5043.1|Name=mRNA_H-elongata_contig185914.5043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
DVIGLQETKRDGHSEITASGYRVYFSGDYTEVKGKKGQHGVGLAIKEEIV
NKAGKDDIEIECISARLLKARISIKSIFVTFVIAYAPTEEATEGEKAKYI
AALNSTV
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mRNA from alignment at H-elongata_contig185914:213..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185914.5043.1 ID=mRNA_H-elongata_contig185914.5043.1|Name=mRNA_H-elongata_contig185914.5043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig185914:213..533- (Himanthalia elongata Himel1 dioecious)
GATGTTATCGGACTGCAGGAGACAAAACGGGACGGACATTCTGAAATAAC
TGCATCTGGATACCGGGTCTATTTCAGTGGTGACTATACCGAAGTCAAAG
GGAAGAAGGGGCAACATGGAGTGGGACTAGCGATAAAGGAGGAGATCGTT
AATAAGGCCGGCAAGGACGACATCGAAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCTCGAATATCAATTAAATCTATTTTTGTGACGTTTGTGATAG
CTTACGCTCCAACCGAGGAAGCGACGGAGGGGGAGAAGGCCAAGTATATC
GCAGCCCTCAACAGCACCGTA
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Coding sequence (CDS) from alignment at H-elongata_contig185914:213..533-

>mRNA_H-elongata_contig185914.5043.1 ID=mRNA_H-elongata_contig185914.5043.1|Name=mRNA_H-elongata_contig185914.5043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig185914:213..533- (Himanthalia elongata Himel1 dioecious)
GATGTTATCGGACTGCAGGAGACAAAACGGGACGGACATTCTGAAATAAC
TGCATCTGGATACCGGGTCTATTTCAGTGGTGACTATACCGAAGTCAAAG
GGAAGAAGGGGCAACATGGAGTGGGACTAGCGATAAAGGAGGAGATCGTT
AATAAGGCCGGCAAGGACGACATCGAAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCTCGAATATCAATTAAATCTATTTTTGTGACGTTTGTGATAG
CTTACGCTCCAACCGAGGAAGCGACGGAGGGGGAGAAGGCCAAGTATATC
GCAGCCCTCAACAGCACCGTAGATGTTATCGGACTGCAGGAGACAAAACG
GGACGGACATTCTGAAATAACTGCATCTGGATACCGGGTCTATTTCAGTG
GTGACTATACCGAAGTCAAAGGGAAGAAGGGGCAACATGGAGTGGGACTA
GCGATAAAGGAGGAGATCGTTAATAAGGCCGGCAAGGACGACATCGAAAT
CGAGTGCATCAGCGCACGTCTCCTGAAGGCTCGAATATCAATTAAATCTA
TTTTTGTGACGTTTGTGATAGCTTACGCTCCAACCGAGGAAGCGACGGAG
GGGGAGAAGGCCAAGTATATCGCAGCCCTCAACAGCACCGTA
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