mRNA_H-elongata_contig106209.504.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106209.504.1
Unique NamemRNA_H-elongata_contig106209.504.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A7K5HG75_CROSL (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Crotophaga sulcirostris TaxID=33598 RepID=A0A7K5HG75_CROSL)

HSP 1 Score: 51.6 bits (122), Expect = 2.360e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    7 GFIQMIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            G   M +AKVLVG+F+ GNS  VRPP  + S  +R YD+ V+N+  P IFV
Sbjct:  134 GRYSMFVAKVLVGEFVQGNSEYVRPPP-KPSNSNRFYDSCVNNLTDPSIFV 183
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A674CPF9_SALTR (PARP catalytic domain-containing protein n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674CPF9_SALTR)

HSP 1 Score: 49.7 bits (117), Expect = 3.580e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   19 MIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            M + +VLVG +  GNS+ VRPP  +++GG   YD+ VDN+  PK+FV
Sbjct:    1 MFVCRVLVGDYTEGNSSYVRPPP-KETGGSIFYDSCVDNIKDPKVFV 46
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: UPI001CF2359B (uncharacterized protein LOC114954972 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF2359B)

HSP 1 Score: 51.6 bits (122), Expect = 3.820e-6
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    7 GFIQMIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            G   M +A+VLVG +  G  +M RPPL  D+  +  +D+ VDN++TPKI+V
Sbjct: 1154 GLRYMFLAEVLVGSYTKGELSMKRPPLKGDTASNERFDSCVDNMDTPKIYV 1204
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A7K4KAK0_9AVES (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Crypturellus soui TaxID=458187 RepID=A0A7K4KAK0_9AVES)

HSP 1 Score: 50.4 bits (119), Expect = 5.060e-6
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    7 GFIQMIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            G ++M +A+VLVG F+ GNS  +RPP  R    +R YD+ VD+ N P IFV
Sbjct:  115 GNLRMFVARVLVGDFVRGNSEYLRPPP-RPDNPNRLYDSCVDDPNNPSIFV 164
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A3P8VCA7_CYNSE (TCDD-inducible poly [ADP-ribose] polymerase-like n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VCA7_CYNSE)

HSP 1 Score: 51.2 bits (121), Expect = 5.190e-6
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   19 MIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            M +AKVLVGK I+G +   RPP L     HR YDT VDN+  P +FV
Sbjct:  555 MFLAKVLVGKVIVGQNIFRRPPPLNTRTKHRLYDTCVDNLEKPTMFV 601
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A6J8DRA1_MYTCO (Poly [ADP-ribose] polymerase n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DRA1_MYTCO)

HSP 1 Score: 50.8 bits (120), Expect = 7.100e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   16 QMIMAKVLVGKFIMGNSNMVRPP-LLRDSGGHRTYDTTVDNVNTPKIFV 159
            +MI+++VLVGK+  GN+N  +PP L  D    R YD+ VD+++ PKIFV
Sbjct:  574 RMILSRVLVGKYTGGNANFRKPPPLFADDPSGRYYDSCVDHIHAPKIFV 622
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A060X0K2_ONCMY (Poly [ADP-ribose] polymerase n=9 Tax=Oncorhynchus TaxID=8016 RepID=A0A060X0K2_ONCMY)

HSP 1 Score: 48.9 bits (115), Expect = 8.440e-6
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    7 GFIQMIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            G   M + +VLVG + +GNS+ + PPL +++GG   YD+ VDN+  P +FV
Sbjct:   60 GVRSMFVCRVLVGDYTVGNSSCLTPPL-KETGGSIAYDSCVDNIQEPHVFV 109
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A455B1X7_PHYMC (Poly [ADP-ribose] polymerase n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455B1X7_PHYMC)

HSP 1 Score: 50.4 bits (119), Expect = 9.600e-6
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   19 MIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            M +A+VLVG+FI GN+N VRPP  ++  G+  YD+ V+ V+ P IFV
Sbjct:  298 MFLARVLVGEFIRGNANFVRPPA-KEGQGNVLYDSCVNRVSDPSIFV 343
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BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A383ZPT2_BALAS (protein mono-ADP-ribosyltransferase PARP12 n=4 Tax=Balaenoptera TaxID=9766 RepID=A0A383ZPT2_BALAS)

HSP 1 Score: 50.4 bits (119), Expect = 9.730e-6
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   19 MIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFV 159
            M +A+VLVG+F+ GN+N VRPP  ++  G+  YD+ V++V+ P IFV
Sbjct:  617 MFLARVLVGEFVRGNANFVRPPA-KEGQGNVLYDSCVNHVSDPSIFV 662
[Close]
BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Match: A0A8B6C8I5_MYTGA (Poly [ADP-ribose] polymerase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6C8I5_MYTGA)

HSP 1 Score: 50.4 bits (119), Expect = 9.760e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   16 QMIMAKVLVGKFIMGNSNMVRPP-LLRDSGGHRTYDTTVDNVNTPKIFV 159
            +MI+++VLVGK+  GN+N  +PP L  D    R YD+ VD+++ PKIFV
Sbjct:  817 RMILSRVLVGKYTGGNANYRKPPPLFADDPSGRYYDSCVDHIHAPKIFV 865
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106209.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K5HG75_CROSL2.360e-650.98Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Cr... [more]
A0A674CPF9_SALTR3.580e-648.94PARP catalytic domain-containing protein n=1 Tax=S... [more]
UPI001CF2359B3.820e-645.10uncharacterized protein LOC114954972 n=2 Tax=Acrop... [more]
A0A7K4KAK0_9AVES5.060e-649.02Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Cr... [more]
A0A3P8VCA7_CYNSE5.190e-653.19TCDD-inducible poly [ADP-ribose] polymerase-like n... [more]
A0A6J8DRA1_MYTCO7.100e-648.98Poly [ADP-ribose] polymerase n=1 Tax=Mytilus corus... [more]
A0A060X0K2_ONCMY8.440e-643.14Poly [ADP-ribose] polymerase n=9 Tax=Oncorhynchus ... [more]
A0A455B1X7_PHYMC9.600e-651.06Poly [ADP-ribose] polymerase n=1 Tax=Physeter macr... [more]
A0A383ZPT2_BALAS9.730e-648.94protein mono-ADP-ribosyltransferase PARP12 n=4 Tax... [more]
A0A8B6C8I5_MYTGA9.760e-648.98Poly [ADP-ribose] polymerase n=1 Tax=Mytilus gallo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106209contigH-elongata_contig106209:581..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.3232698-CDS-H-elongata_contig106209:580..7301622929593.3232698-CDS-H-elongata_contig106209:580..730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106209 581..730 -
1691679083.2908378-CDS-H-elongata_contig106209:580..7301691679083.2908378-CDS-H-elongata_contig106209:580..730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106209 581..730 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.3381326-UTR-H-elongata_contig106209:730..7481622929593.3381326-UTR-H-elongata_contig106209:730..748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106209 731..748 -
1691679083.2989175-UTR-H-elongata_contig106209:730..7481691679083.2989175-UTR-H-elongata_contig106209:730..748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106209 731..748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106209.504.1prot_H-elongata_contig106209.504.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106209 581..730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106209.504.1

>prot_H-elongata_contig106209.504.1 ID=prot_H-elongata_contig106209.504.1|Name=mRNA_H-elongata_contig106209.504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MIMAKVLVGKFIMGNSNMVRPPLLRDSGGHRTYDTTVDNVNTPKIFVRM*
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mRNA from alignment at H-elongata_contig106209:581..748-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106209.504.1 ID=mRNA_H-elongata_contig106209.504.1|Name=mRNA_H-elongata_contig106209.504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig106209:581..748- (Himanthalia elongata Himel1 dioecious)
GCGATCGGGTTCATTCAGATGATCATGGCCAAGGTCTTGGTCGGGAAATT
TATCATGGGGAATTCGAACATGGTAAGACCGCCATTGCTAAGAGACTCCG
GCGGCCATCGAACCTACGACACCACCGTCGACAACGTTAACACGCCAAAG
ATATTTGTGAGAATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig106209:581..748-

>mRNA_H-elongata_contig106209.504.1 ID=mRNA_H-elongata_contig106209.504.1|Name=mRNA_H-elongata_contig106209.504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig106209:581..748- (Himanthalia elongata Himel1 dioecious)
ATGATCATGGCCAAGGTCTTGGTCGGGAAATTTATCATGGGGAATTCGAA
CATGGTAAGACCGCCATTGCTAAGAGACTCCGGCGGCCATCGAACCTACG
ACACCACCGTCGACAACGTTAACACGCCAAAGATATTTGTGAGAATGTAG
ATGATCATGGCCAAGGTCTTGGTCGGGAAATTTATCATGGGGAATTCGAA
CATGGTAAGACCGCCATTGCTAAGAGACTCCGGCGGCCATCGAACCTACG
ACACCACCGTCGACAACGTTAACACGCCAAAGATATTTGTGAGAATGTAG
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