prot_H-elongata_contig18588.5038.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18588.5038.1
Unique Nameprot_H-elongata_contig18588.5038.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length354
Homology
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.960e-65
Identity = 121/202 (59.90%), Postives = 147/202 (72.77%), Query Frame = 0
Query:    1 MKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTG---PAPKDTKDGKAGER--------SADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSRESQRTATVGSAA 191
            MKEE+F+ AL   A +A +GER  SWDL+YF PGKMSK+RGRVT TAYL I+R RG +ADLS+ KLRAAV   +A+T    PA   +K+G             +A AGP V AAPFQKLFKQKPK+DVRVGTIEKDA +KAFCAALQSP     SADVQ D R+ EGK++PK  NA+LDFL+ER A++ R+SQR A +GS+A
Sbjct:   37 MKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSSA 238          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.940e-19
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    4 EDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTR 152
            EDF + +  VA EA   ER  ++ ++Y++PGK+SK+RG++T   YL + R  G++         AA +   A          D  A      A P+V  AP+Q++F+ KP++D   GT E+D D++AFCAAL+ P     SADVQ+D R
Sbjct:   77 EDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAGVTP--------AAAVDAVAXXXXXXXXXFDTHARADPDAARPLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQR 217          
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-6
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  103 APFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSR 179
            APFQK+ ++K +KD ++GTI++D DF AF   L  P     SADV  D ++ EG + P +  A++ +L ER+  K++
Sbjct:  186 APFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAEKPVA--ALVQYLNERKRDKAK 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCG9_ECTSI1.960e-6559.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7E8_9STRA2.940e-1937.58Smg4_UPF3 domain-containing protein n=1 Tax=Tribon... [more]
A0A8K1FA17_PYTOL1.390e-640.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 1..173
e-value: 1.0E-12
score: 48.4
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 92..315

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18588contigH-elongata_contig18588:325..2144 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18588.5038.1mRNA_H-elongata_contig18588.5038.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18588 295..3115 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18588.5038.1 ID=prot_H-elongata_contig18588.5038.1|Name=mRNA_H-elongata_contig18588.5038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp
MKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQ
INRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMV
LAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPPPPPPSADVQVD
TRDLEGKDDPKSPNAILDFLKEREAKKSRESQRTATVGSAARGTRRSSSS
SGGSSGSTTAKTTATAAAAAGMSATSSTSATKLKHPPPPPSSSSTAISSA
ETPKIGKSKDEEREPPKAHKSRSGGSGGGGSRRSNSQTSRGSSSAARPPP
SPAAQEQTSESGSEGPILSKEKGGAGSVAGSGGGRRNGGKSRAGGKSTSS
GSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005120UPF3_dom
IPR039722Upf3