mRNA_H-elongata_contig18588.5038.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI) HSP 1 Score: 241 bits (616), Expect = 1.240e-68 Identity = 129/212 (60.85%), Postives = 157/212 (74.06%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTG---PAPKDTKDGKAGER--------SADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSRESQRTATVGSAA 603
KVV+RRLPH+MKEE+F+ AL A +A +GER SWDL+YF PGKMSK+RGRVT TAYL I+R RG +ADLS+ KLRAAV +A+T PA +K+G +A AGP V AAPFQKLFKQKPK+DVRVGTIEKDA +KAFCAALQSP SADVQ D R+ EGK++PK NA+LDFL+ER A++ R+SQR A +GS+A
Sbjct: 27 KVVVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGSSA 238
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.370e-20 Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTR 486
K+V+RRL EDF + + VA EA ER ++ ++Y++PGK+SK+RG++T YL + R G++ AA + A D A A P+V AP+Q++F+ KP++D GT E+D D++AFCAAL+ P SADVQ+D R
Sbjct: 64 KIVVRRLSPYFTPEDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAGVTP--------AAAVDAVAXXXXXXXXXFDTHARADPDAARPLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQR 217
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A061RR23_9CHLO (Regulator of nonsense transcripts 3 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RR23_9CHLO) HSP 1 Score: 69.3 bits (168), Expect = 7.710e-9 Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSRESQRTATVGSA 600
KVV+R+LP E+ +E+F TAL + + +R SW F GK+S +R S AYL++ T ++I+ A + + + KAG A V APFQK + + +KD R GT+ KDADF++F L++P SA+ Q+ + D +++F++++ A+K+ + + A G+A
Sbjct: 10 KVVVRKLPPELTQEEFQTALDSILDRSRY-----SW--FRFMQGKISLKRV-YNSCAYLKLKDT------ATVIEFSAKI------------NGRHFKAGNLRPLACE-VQYAPFQKAPRARSRKDPREGTLCKDADFQSFKERLEAPPAPLPSAEGQLQADEKGSGSDAVVVTPLMEFIRQKYARKAPKPKVAAVKGAA 182
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL) HSP 1 Score: 66.2 bits (160), Expect = 9.570e-8 Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMS-----KRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSR 567
KV++R +PH M + L L +A R S W F PGK+ R GR+ YL + L+ + I KL VL+ D KD + V APFQK+ ++K +KD ++GTI++D DF AF L P SADV D ++ EG + P + A++ +L ER+ K++
Sbjct: 100 KVLVRDIPHTMDLDKMLEVL-----DANGVARDSVWR---FVPGKVRGNNRVPRPGRL----YLDFKKETELAKTV-ITKLDGYVLS----------DVKDTPKLQ--------VDFAPFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAEKPVA--ALVQYLNERKRDKAK 260
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A423SUN6_PENVA (Regulator of nonsense transcripts 3A n=2 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423SUN6_PENVA) HSP 1 Score: 62.4 bits (150), Expect = 1.120e-6 Identity = 61/201 (30.35%), Postives = 89/201 (44.28%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQ--KPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSA------DVQVDTRDLEGKDDP-KSPNAILDFLKEREAKKSRESQ 576
KVV RRLP M EE+FL A++P+AE +D F P S S AY+ T + V D K E A MV APFQK+ K+ KKD+RVGTI++D DF AF +L+ P ++Q R+L+ + K +L+F+++++A+K R +
Sbjct: 43 KVVARRLPPTMTEEEFLEAVSPLAE----------YDYFSFVPADKSLG-AHAFSRAYINFKNTDDVFTFRDRFDSYVFV---------------DKKGNEYPA----MVEYAPFQKIPKRAGNKKKDIRVGTIDQDPDFMAFLESLEKPESVQLPTLEVVLEEIQAHERELKANNGIIKVKTPLLEFIEQKKAEKLRTKE 213
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A2D4CDX7_PYTIN (Smg4_UPF3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDX7_PYTIN) HSP 1 Score: 61.2 bits (147), Expect = 3.060e-6 Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKM-SKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREAKKSR 567
KVVIR++PH++ EE + +A R+ W F PGK+ R YL + + + + +L+ A +T G + D V APFQK+ ++K ++D +VGTIEKD ++ AF L P SAD+ +D++D + P + A++ +L ER K +
Sbjct: 114 KVVIRQIPHDVDEETVYARIL----DAHDVSRSHIWR---FVPGKVRGNNRPPYPGRLYLDFKKDTEXATSV-VAQLKGAEIT--------------SSKGTVTLD----VDFAPFQKIPREKQRRDPKVGTIEKDPEYLAFLEDLAKPAEKLPSADLALDSKDGAAAEKPVA--ALVQYLNERRRDKGK 275
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: A0A662YFV9_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFV9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.960e-6 Identity = 55/186 (29.57%), Postives = 86/186 (46.24%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKM-SKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLA-APFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDL-EGKDDPKSPNAILDFLKER 549
K+V+R LP E D L L P+ + AS W F G++ +R V + YL + + + L A L ++ G D K G+ + DA +V+ APFQK+ ++K +KD +VGTI++D ++ AF LQ P S D+ EG+ K ++ +L ER
Sbjct: 53 KLVVRNLPPSATEADALRLLAPLGVDG-----ASVWR---FVAGRVRGNQRAPVPARLYLDLKKEPERARKL------IAALHGQSFWGD---DAKGGRLQDNGEDASSLVVEFAPFQKIPREKQRKDAKVGTIDRDPEYLAFLEELQKPRDVSLSLPSAEAVADMAEGEAVEKPVATLVKYLNER 221
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: K3XC97_GLOUD (Smg4_UPF3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC97_GLOUD) HSP 1 Score: 60.8 bits (146), Expect = 5.220e-6 Identity = 63/206 (30.58%), Postives = 93/206 (45.15%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKM-SKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQKPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSADVQVDTRDLEGKDDPKSPNAILDFLKEREA----KKSRESQRTATVGSAA 603
KVV+R +PH +ED + AL EA R S W F PGK+ R T YL + + L A A+ G T D A V AP+QK+ + K +KD +VGTI++D ++ AF L P SA+V DT +++ + P + A++ ++ ER+ K +S + A GSAA
Sbjct: 95 KVVVRNIPHTT-DEDAIWALV----EAHGVTRESLWR---FVPGKVRGNNRQPTTGRMYLDLKKD-----------LEQARRLIAALNGHVLDVTADPPARLE-------VEFAPYQKIPRDKQRKDAKVGTIDRDPEYLAFLEELAKPKEKLPSAEVVADTAEVDVAEKPVA--ALVKYMNERKVHSRDKGKGKSGKFAEKGSAA 272
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: UPI001FB5BFFE (regulator of nonsense transcripts 3A-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB5BFFE) HSP 1 Score: 59.3 bits (142), Expect = 5.870e-6 Identity = 59/201 (29.35%), Postives = 87/201 (43.28%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQ--KPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSA------DVQVDTRDLEGKDDP-KSPNAILDFLKEREAKKSRESQ 576
KVV RRLP M EE+FL A++P+AE +D F P S S AY+ T + V D K E A MV APFQK+ K+ KKD+R GTI++D DF AF +L+ P ++ R+L+ + K +L+F+++++A+K R +
Sbjct: 43 KVVARRLPPSMTEEEFLEAVSPLAE----------YDYFSFVPADRSLG-AHAFSRAYINFKNTDDVFTFRDRFDSYVFV---------------DKKGNEYPA----MVEYAPFQKIPKRIGNKKKDIRAGTIDQDPDFMAFLESLEKPETVQLPTLEVVLEEIHAHERELKANNGIIKVKTPLLEFIEQKKAEKLRTKE 213
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Match: UPI0018A6EE1F (regulator of nonsense transcripts 3B-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6EE1F) HSP 1 Score: 60.5 bits (145), Expect = 9.130e-6 Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 1
Query: 1 KVVIRRLPHEMKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQINRTRGLSADLSIIKLRAAVLTCEAMTGPAPKDTKDGKAGERSADAGPMVLAAPFQKLFKQ--KPKKDVRVGTIEKDADFKAFCAALQSPXXXXXSA------DVQVDTRDLEGKDDP-KSPNAILDFLKEREAKKSR 567
KVV RRLP M EE+FL A++P+AE +D F P S S AY+ T + V D K E A MV APFQK+ K+ KKD+R GTI++D DF AF +L+ P ++Q R+L+ + K +L+F+++++A+K R
Sbjct: 43 KVVARRLPPTMTEEEFLEAVSPLAE----------YDYFSFVPADKSLG-AHAFSRAYINFKNTDDVFTFRDRFDSYVFV---------------DKKGNEYPA----MVEYAPFQKIPKRTGNKKKDIRAGTIDQDPDFMAFLESLEKPETVQLPTLEVVLEEIQAHERELKANNGIIKVKTPLLEFIEQKKAEKLR 210 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18588.5038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18588.5038.1 >prot_H-elongata_contig18588.5038.1 ID=prot_H-elongata_contig18588.5038.1|Name=mRNA_H-elongata_contig18588.5038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp MKEEDFLTALTPVAEEARLGERASSWDLVYFAPGKMSKRRGRVTSTAYLQback to top mRNA from alignment at H-elongata_contig18588:295..3115+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18588.5038.1 ID=mRNA_H-elongata_contig18588.5038.1|Name=mRNA_H-elongata_contig18588.5038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2821bp|location=Sequence derived from alignment at H-elongata_contig18588:295..3115+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18588:295..3115+ >mRNA_H-elongata_contig18588.5038.1 ID=mRNA_H-elongata_contig18588.5038.1|Name=mRNA_H-elongata_contig18588.5038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2124bp|location=Sequence derived from alignment at H-elongata_contig18588:295..3115+ (Himanthalia elongata Himel1 dioecious)back to top |