prot_H-elongata_contig185780.5033.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig185780.5033.1
Unique Nameprot_H-elongata_contig185780.5033.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 72.0 bits (175), Expect = 1.120e-12
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAGLLW 93
            GF Q++GI Y+E+ S     TS+R  L++ VA  WE  Q+DV+  +L  D+EEE+Y++LPE ++ + K +V  L+K++Y L  A   W
Sbjct:  152 GFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 72.0 bits (175), Expect = 1.160e-12
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAGLLW 93
            GF Q++GI Y+E  S     TS+R  L+++VA  WE  Q+DV+  +L  D+EEE+Y++LPE ++ + K +V  L+K++Y L  A   W
Sbjct:  621 GFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: Q9FY10_PICAB (Reverse transcriptase (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=Q9FY10_PICAB)

HSP 1 Score: 67.4 bits (163), Expect = 1.490e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 0
Query:    8 FRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRKQ--VDLLKKAMYELVHAGLLW 93
            F QV+G+ Y+E+ +     TSIR+V+S+ V +GW+  Q+DV   +L+  +EEE+Y+E P  +    ++  V  LKKA+Y L  A   W
Sbjct:    1 FSQVEGVDYDETFAPVARYTSIRVVISIAVEMGWKIHQMDVKTAFLNGLIEEEVYIEKPLGFEVHGRESHVCRLKKALYGLKEAPRAW 88          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 71.2 bits (173), Expect = 2.170e-12
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAGLLW 93
            GF Q++GI Y+E  S     TS+R  L++ VA  WE  Q+DV+  +L  D+EEE+Y++LPE ++ + K +V  L+K++Y L  A   W
Sbjct:  875 GFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 69.3 bits (168), Expect = 4.060e-12
Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYR--DSRKQVDLLKKAMYELVHAGLLW 93
            G+ Q  GI Y+E+ +      ++R+VL++    GW+  QLDV   +L  ++EEE+Y+E+P+ ++  + R +V LLKKA+Y L  +   W
Sbjct:   62 GYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A699J4D0_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699J4D0_TANCI)

HSP 1 Score: 69.3 bits (168), Expect = 9.710e-12
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAY-RDSRKQVDLLKKAMYELVHAGLLW 93
            GF Q++G+ Y E+ +       +R +L++ +  GWE RQLDVD  +L  D+EEE+Y+++P+ + +++  +V  LKK++Y L  A   W
Sbjct:  169 GFTQIEGVDYHETFAPVAKLVKVRTLLAISMKRGWEIRQLDVDNAFLHGDLEEEVYMKIPQGFSKENETRVCKLKKSIYGLKQASRNW 256          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A1S4D038_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4D038_TOBAC)

HSP 1 Score: 68.2 bits (165), Expect = 2.290e-11
Identity = 32/89 (35.96%), Postives = 58/89 (65.17%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDS--RKQVDLLKKAMYELVHAGLLW 93
            G+ Q++G++++++ S      +IR+VLS+I+AL W+ +QL+V   +L  D++E++++E P  +R+      V LLKKA+Y L  A   W
Sbjct:   53 GYNQIEGVYFDDTFSPVVKAATIRVVLSIIIALNWDIKQLNVKNAFLHGDLKEKVFMEQPPRFRNPIFPNHVCLLKKAIYALKQAPKYW 141          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A2K3LXR2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LXR2_TRIPR)

HSP 1 Score: 67.8 bits (164), Expect = 2.490e-11
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK--QVDLLKKAMYELVHAGLLW 93
            GF+Q+ G+ +EE+ S      ++RI+L+++V L W+ RQLD++  +L+  ++E +Y+  PE Y D  K   +  L KA+Y L  A   W
Sbjct:    6 GFQQIAGVDFEETFSPVVRANTVRIILTIVVHLNWDIRQLDINNVFLNGHLKETVYMSQPEGYADPTKPHHICKLSKAIYGLKQAPRAW 94          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 64.7 bits (156), Expect = 3.380e-11
Identity = 31/85 (36.47%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAG 90
            GF Q++G  + E+ +     T++R +LS+ VA GWE  Q+DV   +L  D+EEE+Y+++P+ Y+  ++  V  L+K++Y L  A 
Sbjct:   53 GFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGLKQAS 137          
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI)

HSP 1 Score: 67.8 bits (164), Expect = 3.570e-11
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    7 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRKQVDLLKKAMYELVHAGLLW 93
            GF Q++G+ Y E+ + T    +I+++LS+ V+ G +  Q DV   +L  ++EEE+Y++LP+  ++S  +V  LKKA+Y L  A   W
Sbjct:  706 GFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCW 792          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438GNV2_VITVI1.120e-1240.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI1.160e-1240.91Retrovirus-related Pol polyprotein from transposon... [more]
Q9FY10_PICAB1.490e-1238.64Reverse transcriptase (Fragment) n=1 Tax=Picea abi... [more]
A5BCC7_VITVI2.170e-1240.91Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A151RGT1_CAJCA4.060e-1235.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A699J4D0_TANCI9.710e-1236.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A1S4D038_TOBAC2.290e-1135.96uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2K3LXR2_TRIPR2.490e-1135.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3JLR7_TRIPR3.380e-1136.47Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K725_LASNI3.570e-1136.78Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 6..93
e-value: 6.3E-16
score: 58.8
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 7..86
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 7..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185780contigH-elongata_contig185780:194..475 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185780.5033.1mRNA_H-elongata_contig185780.5033.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig185780 194..475 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig185780.5033.1 ID=prot_H-elongata_contig185780.5033.1|Name=mRNA_H-elongata_contig185780.5033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MSSRGAGFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDM
TYLDADVEEEIYVELPEAYRDSRKQVDLLKKAMYELVHAGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like