mRNA_H-elongata_contig185780.5033.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 72.0 bits (175), Expect = 1.120e-12 Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAGLLW 279
GF Q++GI Y+E+ S TS+R L++ VA WE Q+DV+ +L D+EEE+Y++LPE ++ + K +V L+K++Y L A W
Sbjct: 152 GFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 72.0 bits (175), Expect = 1.160e-12 Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAGLLW 279
GF Q++GI Y+E S TS+R L+++VA WE Q+DV+ +L D+EEE+Y++LPE ++ + K +V L+K++Y L A W
Sbjct: 621 GFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: Q9FY10_PICAB (Reverse transcriptase (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=Q9FY10_PICAB) HSP 1 Score: 67.4 bits (163), Expect = 1.490e-12 Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 22 FRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRKQ--VDLLKKAMYELVHAGLLW 279
F QV+G+ Y+E+ + TSIR+V+S+ V +GW+ Q+DV +L+ +EEE+Y+E P + ++ V LKKA+Y L A W
Sbjct: 1 FSQVEGVDYDETFAPVARYTSIRVVISIAVEMGWKIHQMDVKTAFLNGLIEEEVYIEKPLGFEVHGRESHVCRLKKALYGLKEAPRAW 88
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 71.2 bits (173), Expect = 2.170e-12 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAGLLW 279
GF Q++GI Y+E S TS+R L++ VA WE Q+DV+ +L D+EEE+Y++LPE ++ + K +V L+K++Y L A W
Sbjct: 875 GFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA) HSP 1 Score: 69.3 bits (168), Expect = 4.060e-12 Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYR--DSRKQVDLLKKAMYELVHAGLLW 279
G+ Q GI Y+E+ + ++R+VL++ GW+ QLDV +L ++EEE+Y+E+P+ ++ + R +V LLKKA+Y L + W
Sbjct: 62 GYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A699J4D0_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699J4D0_TANCI) HSP 1 Score: 69.3 bits (168), Expect = 9.710e-12 Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAY-RDSRKQVDLLKKAMYELVHAGLLW 279
GF Q++G+ Y E+ + +R +L++ + GWE RQLDVD +L D+EEE+Y+++P+ + +++ +V LKK++Y L A W
Sbjct: 169 GFTQIEGVDYHETFAPVAKLVKVRTLLAISMKRGWEIRQLDVDNAFLHGDLEEEVYMKIPQGFSKENETRVCKLKKSIYGLKQASRNW 256
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A1S4D038_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4D038_TOBAC) HSP 1 Score: 68.2 bits (165), Expect = 2.290e-11 Identity = 32/89 (35.96%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDS--RKQVDLLKKAMYELVHAGLLW 279
G+ Q++G++++++ S +IR+VLS+I+AL W+ +QL+V +L D++E++++E P +R+ V LLKKA+Y L A W
Sbjct: 53 GYNQIEGVYFDDTFSPVVKAATIRVVLSIIIALNWDIKQLNVKNAFLHGDLKEKVFMEQPPRFRNPIFPNHVCLLKKAIYALKQAPKYW 141
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A2K3LXR2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LXR2_TRIPR) HSP 1 Score: 67.8 bits (164), Expect = 2.490e-11 Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK--QVDLLKKAMYELVHAGLLW 279
GF+Q+ G+ +EE+ S ++RI+L+++V L W+ RQLD++ +L+ ++E +Y+ PE Y D K + L KA+Y L A W
Sbjct: 6 GFQQIAGVDFEETFSPVVRANTVRIILTIVVHLNWDIRQLDINNVFLNGHLKETVYMSQPEGYADPTKPHHICKLSKAIYGLKQAPRAW 94
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR) HSP 1 Score: 64.7 bits (156), Expect = 3.380e-11 Identity = 31/85 (36.47%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRK-QVDLLKKAMYELVHAG 270
GF Q++G + E+ + T++R +LS+ VA GWE Q+DV +L D+EEE+Y+++P+ Y+ ++ V L+K++Y L A
Sbjct: 53 GFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGLKQAS 137
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI) HSP 1 Score: 67.8 bits (164), Expect = 3.570e-11 Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 19 GFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMTYLDADVEEEIYVELPEAYRDSRKQVDLLKKAMYELVHAGLLW 279
GF Q++G+ Y E+ + T +I+++LS+ V+ G + Q DV +L ++EEE+Y++LP+ ++S +V LKKA+Y L A W
Sbjct: 706 GFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCW 792 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185780.5033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig185780.5033.1 >prot_H-elongata_contig185780.5033.1 ID=prot_H-elongata_contig185780.5033.1|Name=mRNA_H-elongata_contig185780.5033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp MSSRGAGFRQVKGIHYEESSSSTPAQTSIRIVLSMIVALGWEARQLDVDMback to top mRNA from alignment at H-elongata_contig185780:194..475- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig185780.5033.1 ID=mRNA_H-elongata_contig185780.5033.1|Name=mRNA_H-elongata_contig185780.5033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig185780:194..475- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig185780:194..475- >mRNA_H-elongata_contig185780.5033.1 ID=mRNA_H-elongata_contig185780.5033.1|Name=mRNA_H-elongata_contig185780.5033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig185780:194..475- (Himanthalia elongata Himel1 dioecious)back to top |