prot_H-elongata_contig185664.5028.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig185664.5028.1
Unique Nameprot_H-elongata_contig185664.5028.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length117
Homology
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.270e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 0
Query:    4 AKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 114
            A  +CD I +QETRR  +  I     GYV+  SG   G   + G+ GVG+A++E++  ++G  G   E IS RL+ VR+        TF+VGYAPTETA          K  FW  L
Sbjct:    8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTAL 122          
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5L4L0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.530e-12
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 0
Query:    8 CDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 114
            CD I +QETRR+ + +I     G V+  SG   G   + G+ GVG+A++E++  ++G +G   E IS RL+ VR+        TF+VGYAPTETA T        K  FW  L
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GDVIIWSGALAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARTTAGGDVNAKDSFWTAL 122          
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.430e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 0
Query:    4 AKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 114
            A  +CD I +QETRR  +  I     GYV+  SG   G   + G+ GVG+A++E++  ++G  G   E IS RL+ VR+        TF+VGYAPTETA          K  FW  L
Sbjct:    8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTAL 122          
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.480e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 0
Query:    4 AKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 114
            A  +CD I +QETRR  +  I     GYV+  SG   G   + G+ GVG+A++E++  ++G  G   E IS RL+ VR+        TF+VGYAPTETA          K  FW  L
Sbjct:  120 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTAL 234          
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-9
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   13 IQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILGVGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTETAATYH------KSKFWKEL 114
            +QETRR  + +I     GYV+  SG   G   + G+ GVG+A++E++  ++G +G   E IS RL+ VR+        TF+VGYAP ETA T        K  FW  L
Sbjct:   12 LQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPMETARTTAGGDVNAKDSFWTAL 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185664.5028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KP87_9PHAE2.270e-1239.32Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L4L0_9PHAE2.530e-1239.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KC90_9PHAE9.430e-1239.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE9.480e-1239.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6H7_9PHAE1.370e-938.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 1..117
e-value: 4.5E-7
score: 31.9
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 4..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185664contigH-elongata_contig185664:868..1218 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185664.5028.1mRNA_H-elongata_contig185664.5028.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig185664 868..1218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig185664.5028.1 ID=prot_H-elongata_contig185664.5028.1|Name=mRNA_H-elongata_contig185664.5028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MFAAKYECDFIAIQETRRDERTTIQAPATGYVMHCSGHCDGDGGEPGILG
VGLAVRESIARALGPDGIVPEHISARLLTVRVIFKHRAVTTFIVGYAPTE
TAATYHKSKFWKELHNT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf