mRNA_H-elongata_contig185612.5024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185612.5024.1
Unique NamemRNA_H-elongata_contig185612.5024.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: D7G8T7_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 9.600e-16
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   10 SEGKIVQAVAKYTEAIELHPTAIYLSNRAFCYVKLENFGLAIFDADSAL 156
            +E K+  AV KYT AI+LHPTAIYLSNRAFCYVKLE FGLAI DAD AL
Sbjct:   51 AESKLGHAVGKYTAAIDLHPTAIYLSNRAFCYVKLEQFGLAILDADMAL 99
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: A0A1X2GYP6_9FUNG (Protein-serine/threonine phosphatase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GYP6_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 2.840e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   13 EGKIVQAVAKYTEAIELHPTAIYLSNRAFCYVKLENFGLAIFDADSAL 156
            E K  +A+ KYTEAIELHP + Y +NRAFC++KLE +G AI DA+SAL
Sbjct:   25 EKKFKEAIEKYTEAIELHPVSTYYTNRAFCHIKLEAYGYAITDAESAL 72
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: A0A835YLG0_9STRA (Protein-serine/threonine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLG0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.880e-10
Identity = 27/50 (54.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   10 SEGKIVQAVAKYTEAIELHPTAIYLSNRAFCYVKLENFGLAIFDADSALR 159
            ++G ++QAV  Y++AI+L PTA++  NRAF Y+K+EN+GLAI D+D A+R
Sbjct:   33 ADGHLIQAVELYSQAIDLVPTAVFYGNRAFTYLKMENYGLAISDSDEAIR 82
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: A0A0G4J756_PLABS (Serine/threonine-protein phosphatase 5 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J756_PLABS)

HSP 1 Score: 63.2 bits (152), Expect = 4.810e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   31 AVAKYTEAIELHPTAIYLSNRAFCYVKLENFGLAIFDADSAL 156
            A+  YT AIE +PTA+Y SNRAFC+++LENFGLAI DA  AL
Sbjct:   63 ALQSYTNAIETYPTAVYYSNRAFCHIRLENFGLAILDATKAL 104
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: A0A1X2IXW0_9FUNG (Protein-serine/threonine phosphatase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IXW0_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 8.900e-10
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   10 SEGKIVQAVAKYTEAIELHPTAIYLSNRAFCYVKLENFGLAIFDADSAL 156
            +E +   A+ KYT AI+L+P + Y SNRAFC++KLEN+G AI DA+SAL
Sbjct:   21 AEKRFSDAIEKYTAAIDLNPVSTYYSNRAFCHLKLENYGYAITDAESAL 69
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: A0A068S0U4_9FUNG (Protein-serine/threonine phosphatase n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S0U4_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 5.220e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   31 AVAKYTEAIELHPT-AIYLSNRAFCYVKLENFGLAIFDADSALR 159
            A+ KYT AIEL+P  A Y +NRAFC+VKLEN+G AI DA+ AL+
Sbjct:   29 AIEKYTAAIELNPNVAAYYTNRAFCHVKLENYGYAISDAEEALK 72
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: H8X5N5_CANO9 (Serine/threonine-protein phosphatase n=2 Tax=Candida TaxID=1535326 RepID=H8X5N5_CANO9)

HSP 1 Score: 55.8 bits (133), Expect = 1.830e-7
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 EGKIVQAVAKYTEAIELHPT-AIYLSNRAFCYVKLENFGLAIFDADSAL 156
            E K  +A+  YT+AIEL PT A++ SNRA  ++K+EN+GLAI D DSAL
Sbjct:   21 EHKFEEAIKSYTKAIELDPTNAVFYSNRAQVHIKMENYGLAIQDCDSAL 69
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: A0A8H7QPR0_9FUNG (Protein-serine/threonine phosphatase n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QPR0_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 2.500e-7
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 EGKIVQAVAKYTEAIELHPT-AIYLSNRAFCYVKLENFGLAIFDADSAL 156
            E K   AV KYTEAI+ +P  A Y +NRAFC++KLE++G AI D+DSAL
Sbjct:   24 EKKYPAAVEKYTEAIKENPNVASYYTNRAFCHLKLESYGYAIADSDSAL 72
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BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: G8BGT8_CANPC (Serine/threonine-protein phosphatase n=1 Tax=Candida parapsilosis (strain CDC 317 / ATCC MYA-4646) TaxID=578454 RepID=G8BGT8_CANPC)

HSP 1 Score: 55.5 bits (132), Expect = 2.510e-7
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 EGKIVQAVAKYTEAIELHPT-AIYLSNRAFCYVKLENFGLAIFDADSAL 156
            E K  +AV  YT+AIEL PT A++ SNRA  ++K+EN+GLAI D DSAL
Sbjct:   21 EHKFDEAVNSYTKAIELDPTNAVFYSNRAQVHIKMENYGLAIQDCDSAL 69
[Close]
BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Match: A0A1Z5K6D3_FISSO (Protein-serine/threonine phosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6D3_FISSO)

HSP 1 Score: 54.3 bits (129), Expect = 6.410e-7
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   13 EGKIVQAVAKYTEAIELHPT-AIYLSNRAFCYVKLENFGLAIFDADSAL 156
            +G+ VQAV +Y+  +E  P  A+ LSNRA  Y+KLEN+GLA+ DAD A+
Sbjct:   62 QGRFVQAVDEYSSGLEYAPQHAVLLSNRALAYIKLENYGLALQDADHAI 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185612.5024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8T7_ECTSI9.600e-1677.55Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A1X2GYP6_9FUNG2.840e-1162.50Protein-serine/threonine phosphatase n=1 Tax=Hesse... [more]
A0A835YLG0_9STRA1.880e-1054.00Protein-serine/threonine phosphatase n=1 Tax=Tribo... [more]
A0A0G4J756_PLABS4.810e-1066.67Serine/threonine-protein phosphatase 5 n=1 Tax=Pla... [more]
A0A1X2IXW0_9FUNG8.900e-1057.14Protein-serine/threonine phosphatase n=1 Tax=Absid... [more]
A0A068S0U4_9FUNG5.220e-863.64Protein-serine/threonine phosphatase n=2 Tax=Licht... [more]
H8X5N5_CANO91.830e-757.14Serine/threonine-protein phosphatase n=2 Tax=Candi... [more]
A0A8H7QPR0_9FUNG2.500e-759.18Protein-serine/threonine phosphatase n=1 Tax=Mucor... [more]
G8BGT8_CANPC2.510e-759.18Serine/threonine-protein phosphatase n=1 Tax=Candi... [more]
A0A1Z5K6D3_FISSO6.410e-753.06Protein-serine/threonine phosphatase n=2 Tax=Fistu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185612contigH-elongata_contig185612:565..762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog2880.D7G8T7
Preferred namePPP5C
KEGG koko:K04460,ko:K11800
KEGG Pathwayko04010,map04010
GOsGO:0000165,GO:0000166,GO:0000278,GO:0000302,GO:0001101,GO:0001932,GO:0001933,GO:0001965,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006325,GO:0006351,GO:0006464,GO:0006468,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009416,GO:0009506,GO:0009628,GO:0009636,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010017,GO:0010019,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010380,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0012505,GO:0014070,GO:0014072,GO:0015630,GO:0015631,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016310,GO:0016311,GO:0016569,GO:0016570,GO:0016576,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0017157,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030054,GO:0030176,GO:0030425,GO:0030554,GO:0031072,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0033143,GO:0033145,GO:0033365,GO:0033554,GO:0033993,GO:0034599,GO:0034613,GO:0034614,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035690,GO:0035970,GO:0036094,GO:0036211,GO:0036477,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042578,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043278,GO:0043279,GO:0043412,GO:0043531,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0045920,GO:0045936,GO:0046483,GO:0046677,GO:0046686,GO:0046906,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051169,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051246,GO:0051248,GO:0051259,GO:0051276,GO:0051291,GO:0051641,GO:0051649,GO:0051716,GO:0051879,GO:0055044,GO:0060255,GO:0060359,GO:0060548,GO:0060627,GO:0065003,GO:0065007,GO:0070013,GO:0070262,GO:0070301,GO:0070542,GO:0070727,GO:0070887,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071276,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0071840,GO:0071944,GO:0072347,GO:0072686,GO:0080090,GO:0090056,GO:0090304,GO:0097159,GO:0097237,GO:0097367,GO:0097447,GO:0097458,GO:0097659,GO:0098827,GO:0101031,GO:0104004,GO:0120025,GO:0120038,GO:0140096,GO:1901214,GO:1901215,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1901701,GO:1902325,GO:1903530,GO:1903531,GO:1904550,GO:1990635,GO:2000322,GO:2000324
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 5 catalytic subunit
Ec32 orthologEc-15_004180.1
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.4450848-CDS-H-elongata_contig185612:564..7621622930061.4450848-CDS-H-elongata_contig185612:564..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185612 565..762 +
1691679265.9667015-CDS-H-elongata_contig185612:564..7621691679265.9667015-CDS-H-elongata_contig185612:564..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185612 565..762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185612.5024.1prot_H-elongata_contig185612.5024.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185612 565..762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185612.5024.1

>prot_H-elongata_contig185612.5024.1 ID=prot_H-elongata_contig185612.5024.1|Name=mRNA_H-elongata_contig185612.5024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MDPSEGKIVQAVAKYTEAIELHPTAIYLSNRAFCYVKLENFGLAIFDADS
ALRCGVGEARLQDMIN
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mRNA from alignment at H-elongata_contig185612:565..762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185612.5024.1 ID=mRNA_H-elongata_contig185612.5024.1|Name=mRNA_H-elongata_contig185612.5024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig185612:565..762+ (Himanthalia elongata Himel1 dioecious)
ATGGACCCGTCAGAGGGCAAGATCGTGCAGGCGGTGGCCAAGTACACGGA
GGCGATAGAGCTACACCCCACCGCCATCTACCTCAGCAACCGCGCCTTCT
GCTACGTTAAGCTCGAGAACTTTGGGCTCGCGATCTTCGATGCCGATTCG
GCGCTCAGGTGCGGGGTGGGGGAAGCGCGGCTGCAAGACATGATCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig185612:565..762+

>mRNA_H-elongata_contig185612.5024.1 ID=mRNA_H-elongata_contig185612.5024.1|Name=mRNA_H-elongata_contig185612.5024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig185612:565..762+ (Himanthalia elongata Himel1 dioecious)
ATGGACCCGTCAGAGGGCAAGATCGTGCAGGCGGTGGCCAAGTACACGGA
GGCGATAGAGCTACACCCCACCGCCATCTACCTCAGCAACCGCGCCTTCT
GCTACGTTAAGCTCGAGAACTTTGGGCTCGCGATCTTCGATGCCGATTCG
GCGCTCAGGTGCGGGGTGGGGGAAGCGCGGCTGCAAGACATGATCAATAT
GGACCCGTCAGAGGGCAAGATCGTGCAGGCGGTGGCCAAGTACACGGAGG
CGATAGAGCTACACCCCACCGCCATCTACCTCAGCAACCGCGCCTTCTGC
TACGTTAAGCTCGAGAACTTTGGGCTCGCGATCTTCGATGCCGATTCGGC
GCTCAGGTGCGGGGTGGGGGAAGCGCGGCTGCAAGACATGATCAAT
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