mRNA_H-elongata_contig185605.5023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185605.5023.1
Unique NamemRNA_H-elongata_contig185605.5023.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185605.5023.1 vs. uniprot
Match: D8LFH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.990e-22
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 TRERLMSEVNEEIKRSKSRMEGFKEVENRMNTRHTRGNAKGAI-EDPFLAQTTGSKTNGNSKRPLCEFT 204
            TRERL++E NEEI+RSK+ MEGFKE  NRMNTRHTRGNAKG I +DP+L  +T SKTNGN KRPLC  +
Sbjct:  177 TRERLLTEANEEIRRSKNVMEGFKEDVNRMNTRHTRGNAKGNIVDDPWLTSSTASKTNGNGKRPLCAIS 245
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BLAST of mRNA_H-elongata_contig185605.5023.1 vs. uniprot
Match: A0A6H5KFI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.390e-21
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 TRERLMSEVNEEIKRSKSRMEGFKEVENRMNTRHTRGNAKGAI-EDPFLAQTTGSKTNGNSKRPLCEFT 204
            TRERL++E NEEI+RSK+ MEGFKE  NRMNTRHTRGNAKG I +DP+L  +T SK NGN KRPLC  +
Sbjct:  392 TRERLLTEANEEIRRSKNLMEGFKEDVNRMNTRHTRGNAKGNIVDDPWLTSSTSSKANGNGKRPLCAIS 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185605.5023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFH0_ECTSI2.990e-2271.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFI1_9PHAE5.390e-2169.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185605contigH-elongata_contig185605:355..853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185605.5023.1prot_H-elongata_contig185605.5023.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185605 355..838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.3768456-CDS-H-elongata_contig185605:354..4851622930061.3768456-CDS-H-elongata_contig185605:354..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185605 355..485 -
1691679265.9384696-CDS-H-elongata_contig185605:354..4851691679265.9384696-CDS-H-elongata_contig185605:354..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185605 355..485 -
1622930061.389354-CDS-H-elongata_contig185605:777..8381622930061.389354-CDS-H-elongata_contig185605:777..838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185605 778..838 -
1691679265.9465938-CDS-H-elongata_contig185605:777..8381691679265.9465938-CDS-H-elongata_contig185605:777..838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185605 778..838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.4030867-UTR-H-elongata_contig185605:838..8531622930061.4030867-UTR-H-elongata_contig185605:838..853Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185605 839..853 -
1691679265.9558482-UTR-H-elongata_contig185605:838..8531691679265.9558482-UTR-H-elongata_contig185605:838..853Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185605 839..853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185605.5023.1

>prot_H-elongata_contig185605.5023.1 ID=prot_H-elongata_contig185605.5023.1|Name=mRNA_H-elongata_contig185605.5023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MSEVNEEIKRSKSRMEGFKEVENRMNTRHTRGNAKGAIEDPFLAQTTGSK
TNGNSKRPLCEFT*
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mRNA from alignment at H-elongata_contig185605:355..853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185605.5023.1 ID=mRNA_H-elongata_contig185605.5023.1|Name=mRNA_H-elongata_contig185605.5023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=499bp|location=Sequence derived from alignment at H-elongata_contig185605:355..853- (Himanthalia elongata Himel1 dioecious)
ACACGAGAGCGTCTGATGAGCGAGGTAAACGAGGAAATCAAGAGGTCCAA
GAGCCGGATGGAAGGTTTCAAGGAAGGTGGGTGGCTGTGCTTTTTCCCAC
TGAATAGATTTGGGGGACATGGGCGTCGGGAAACATTTATGTCGGAAGTG
CCATCATGTAGCCCGCCTTGGGGTCGGCTCGTAGAGCTACGGTTGTGAGT
CACACGAGTTTTATTTTAGCCCTTCTTTTTTTTGAAGTTTGGGGTTGGGG
GTTCGACGTAATATCTTGCCCCTTGGTGCTAAAAGTTATAAAGTTCCAGG
AGTTTCTGCCCCGAAGGTTGATTGATTGATGGGTACGCCGGCAATGACGT
CACTTCTGTGCTCTACAGTGGAAAACCGGATGAATACAAGGCACACGAGG
GGTAACGCTAAGGGCGCGATCGAAGACCCCTTTCTGGCGCAGACGACGGG
TTCCAAGACCAACGGCAACAGCAAGCGGCCGCTCTGTGAGTTTACTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig185605:355..853-

>mRNA_H-elongata_contig185605.5023.1 ID=mRNA_H-elongata_contig185605.5023.1|Name=mRNA_H-elongata_contig185605.5023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig185605:355..853- (Himanthalia elongata Himel1 dioecious)
ATGAGCGAGGTAAACGAGGAAATCAAGAGGTCCAAGAGCCGGATGGAAGG
TTTCAAGGAAGATGAGCGAGGTAAACGAGGAAATCAAGAGGTCCAAGAGC
CGGATGGAAGGTTTCAAGGAAGTGGAAAACCGGATGAATACAAGGCACAC
GAGGGGTAACGCTAAGGGCGCGATCGAAGACCCCTTTCTGGCGCAGACGA
CGGGTTCCAAGACCAACGGCAACAGCAAGCGGCCGCTCTGTGAGTTTACT
TAATGGAAAACCGGATGAATACAAGGCACACGAGGGGTAACGCTAAGGGC
GCGATCGAAGACCCCTTTCTGGCGCAGACGACGGGTTCCAAGACCAACGG
CAACAGCAAGCGGCCGCTCTGTGAGTTTACTTAA
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