mRNA_H-elongata_contig185601.5022.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185601.5022.1
Unique NamemRNA_H-elongata_contig185601.5022.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A804HMU3_MUSAM (DUF659 domain-containing protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804HMU3_MUSAM)

HSP 1 Score: 63.2 bits (152), Expect = 1.190e-9
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVI 213
            W  CAAH +D++LK++  LD     + R   + KF+ NHH   A+ +++ N  ++ P  TRFATN I
Sbjct:  218 WTPCAAHCIDIMLKDIGELDAVKKCVARAQSITKFIYNHHWVHALMQNYVNGEILRPGITRFATNFI 284          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A426WWC4_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426WWC4_ENSVE)

HSP 1 Score: 59.3 bits (142), Expect = 2.700e-8
Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVI 213
            W   AAH +DL+LK++  LD+    + R   + KF+ NHH   ++ + + N  ++ P  TRFATN I
Sbjct:   85 WTSRAAHCIDLMLKDIGELDMVKKCVARAQSITKFIYNHHWVHSLMQKYVNDEILRPGVTRFATNFI 151          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI)

HSP 1 Score: 58.5 bits (140), Expect = 5.060e-8
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    4 RMTWMKCA---AHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
            R  W+ C+   AH +DL L+++   +  + TLK    +VKF+ NHH   A++  H++L L+ P  TRFAT+ I +  +L+
Sbjct:  283 RFPWITCSGCVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHSDLELLKPGDTRFATSFITLERLLE 362          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: UPI00155AACC1 (uncharacterized protein LOC117930350 n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155AACC1)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-7
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    4 RMTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHT-NLRLITPCATRFAT 204
            ++ W  CAAH +DL LK++  L++ A TL R  +VVKF+  H    ++  + T N  L+ P  TRFAT
Sbjct:   85 KLWWTPCAAHCIDLTLKDIGKLNVHATTLSRARQVVKFIYGHTWVFSLMRTFTKNHDLLHPAITRFAT 152          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: UPI000511298E (uncharacterized protein LOC103958368 isoform X1 n=3 Tax=Maleae TaxID=721813 RepID=UPI000511298E)

HSP 1 Score: 56.6 bits (135), Expect = 2.470e-7
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    4 RMTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTN-LRLITPCATRFATNVIVVMYMLK 234
            ++ W +CAAH +DL LK++  +  F DTLK    V K++  H    A+    TN   ++ P  TRFAT+ + +  + K
Sbjct:  316 KLWWTQCAAHCIDLTLKDIAKMKWFDDTLKHAKCVTKYLYGHQWVLALMRKFTNNTEILRPAVTRFATSFLTLQILQK 393          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843V1P5_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V1P5_COLES)

HSP 1 Score: 56.6 bits (135), Expect = 2.490e-7
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1
Query:   13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
            W  CAAH VDL+LK +  L      ++   K+ +++ NHH   A     T   L+ P  TRFATN I +  +LK
Sbjct:  366 WTPCAAHCVDLMLKEIGTLRPVKTVVEAGQKITRYIYNHHVVLAWMRESTGGELLRPAITRFATNFIALQSLLK 439          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843VI85_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VI85_COLES)

HSP 1 Score: 55.5 bits (132), Expect = 6.390e-7
Identity = 28/74 (37.84%), Postives = 38/74 (51.35%), Query Frame = 1
Query:   13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
            W  CAAH VDL+LK +  L      +    K+ +F+ NHH   A     T   L+ P  TRFATN + +  +LK
Sbjct:  442 WTPCAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLK 515          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843TN79_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TN79_COLES)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-6
Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 1
Query:   13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
            W  CAAH VDL+LK +  L      +    K+  F+ NHH   A     T   L+ P  TRFATN + +  +LK
Sbjct:  322 WTPCAAHCVDLMLKEIGTLQPVKMVVDAGQKITHFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLK 395          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A388KCU7_CHABU (DUF659 domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KCU7_CHABU)

HSP 1 Score: 53.9 bits (128), Expect = 2.180e-6
Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   13 WMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIY----ESHTNLRLITPCATRFA 201
            W+ CAAH ++LL+K++  LD     ++R   +VKF++ HH  +++Y    E    L LI P   RFA
Sbjct:  384 WVPCAAHCLNLLMKDVCELDXVKQVVQRTKMMVKFIRKHHNTNSLYTRCSELSRELTLILPTEVRFA 450          
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Match: A0A843TB08_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TB08_COLES)

HSP 1 Score: 53.9 bits (128), Expect = 2.210e-6
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 1
Query:    7 MTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYESHTNLRLITPCATRFATNVIVVMYMLK 234
            + W  CAAH VDL+LK +  L      +    K+ +F+ NHH   A     T   L+ P  T FATN + +  +LK
Sbjct:   83 LCWTPCAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPAVTCFATNFVALQSLLK 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185601.5022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A804HMU3_MUSAM1.190e-938.81DUF659 domain-containing protein n=1 Tax=Musa acum... [more]
A0A426WWC4_ENSVE2.700e-837.31Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A1Y1IK20_KLENI5.060e-836.25DUF659 domain-containing protein n=1 Tax=Klebsormi... [more]
UPI00155AACC11.480e-741.18uncharacterized protein LOC117930350 n=1 Tax=Vitis... [more]
UPI000511298E2.470e-734.62uncharacterized protein LOC103958368 isoform X1 n=... [more]
A0A843V1P5_COLES2.490e-737.84BED-type domain-containing protein n=1 Tax=Colocas... [more]
A0A843VI85_COLES6.390e-737.84BED-type domain-containing protein n=1 Tax=Colocas... [more]
A0A843TN79_COLES1.630e-637.84Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A388KCU7_CHABU2.180e-637.31DUF659 domain-containing protein n=2 Tax=Chara bra... [more]
A0A843TB08_COLES2.210e-635.53Uncharacterized protein n=1 Tax=Colocasia esculent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185601contigH-elongata_contig185601:210..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue9.3e-08
Seed eggNOG ortholog4641.GSMUA_Achr11P13710_001
EggNOG free text desc.Protein of unknown function (DUF 659)
EggNOG OGs2CU6P@1,2RJJK@2759,37Z1G@33090,3GNGN@35493,3M5TQ@4447
COG Functional cat.S
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size261
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.311209-UTR-H-elongata_contig185601:209..2151622930061.311209-UTR-H-elongata_contig185601:209..215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185601 210..215 +
1691679265.9113848-UTR-H-elongata_contig185601:209..2151691679265.9113848-UTR-H-elongata_contig185601:209..215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185601 210..215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.3239336-CDS-H-elongata_contig185601:215..4761622930061.3239336-CDS-H-elongata_contig185601:215..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185601 216..476 +
1691679265.928153-CDS-H-elongata_contig185601:215..4761691679265.928153-CDS-H-elongata_contig185601:215..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185601 216..476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185601.5022.1prot_H-elongata_contig185601.5022.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185601 216..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185601.5022.1

>prot_H-elongata_contig185601.5022.1 ID=prot_H-elongata_contig185601.5022.1|Name=mRNA_H-elongata_contig185601.5022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MTWMKCAAHAVDLLLKNLENLDIFADTLKRINKVVKFVKNHHGASAIYES
HTNLRLITPCATRFATNVIVVMYMLKASISSVYFII*
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mRNA from alignment at H-elongata_contig185601:210..476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185601.5022.1 ID=mRNA_H-elongata_contig185601.5022.1|Name=mRNA_H-elongata_contig185601.5022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig185601:210..476+ (Himanthalia elongata Himel1 dioecious)
AACAGAATGACATGGATGAAGTGCGCAGCTCACGCTGTGGACCTGTTGCT CAAGAATCTCGAGAACCTCGACATCTTCGCCGACACTCTAAAGCGTATCA ACAAGGTCGTGAAGTTCGTCAAAAACCACCACGGCGCCAGCGCCATCTAC GAGAGTCACACCAACCTCCGGTTGATCACCCCCTGCGCCACACGCTTCGC GACCAACGTCATCGTGGTCATGTATATGCTGAAGGCAAGTATTTCAAGTG TTTATTTCATAATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig185601:210..476+

>mRNA_H-elongata_contig185601.5022.1 ID=mRNA_H-elongata_contig185601.5022.1|Name=mRNA_H-elongata_contig185601.5022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig185601:210..476+ (Himanthalia elongata Himel1 dioecious)
ATGACATGGATGAAGTGCGCAGCTCACGCTGTGGACCTGTTGCTCAAGAA
TCTCGAGAACCTCGACATCTTCGCCGACACTCTAAAGCGTATCAACAAGG
TCGTGAAGTTCGTCAAAAACCACCACGGCGCCAGCGCCATCTACGAGAGT
CACACCAACCTCCGGTTGATCACCCCCTGCGCCACACGCTTCGCGACCAA
CGTCATCGTGGTCATGTATATGCTGAAGGCAAGTATTTCAAGTGTTTATT
TCATAATTTGAATGACATGGATGAAGTGCGCAGCTCACGCTGTGGACCTG
TTGCTCAAGAATCTCGAGAACCTCGACATCTTCGCCGACACTCTAAAGCG
TATCAACAAGGTCGTGAAGTTCGTCAAAAACCACCACGGCGCCAGCGCCA
TCTACGAGAGTCACACCAACCTCCGGTTGATCACCCCCTGCGCCACACGC
TTCGCGACCAACGTCATCGTGGTCATGTATATGCTGAAGGCAAGTATTTC
AAGTGTTTATTTCATAATTTGA
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