mRNA_H-elongata_contig185534.5021.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185534.5021.1
Unique NamemRNA_H-elongata_contig185534.5021.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: A0A6H5J663_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J663_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 9.180e-23
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            +VIAKSDY++VAAALTPET GMVGA ELA A+PH VII+IGRGPLIDEEAMT  LRDGRLR
Sbjct:  214 EVIAKSDYILVAAALTPETTGMVGAAELAMARPHAVIINIGRGPLIDEEAMTQMLRDGRLR 274          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: A0A6H5KFZ0_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFZ0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.530e-21
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            DVIA+SDY++VAAALTP T GMVGA EL+RAKPH VIISIGRGPLIDE AMT  L+DGRLR
Sbjct:  213 DVIAQSDYILVAAALTPATMGMVGAEELSRAKPHAVIISIGRGPLIDEVAMTQMLQDGRLR 273          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: A0A835Z904_9STRA (D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z904_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.390e-21
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            DV+A+SDYV VAAALTPET+GM+GA  LARA+PHTVII++GRGPLIDE A+  ALR+GR+R
Sbjct:  202 DVVARSDYVCVAAALTPETRGMLGAAALARARPHTVIINVGRGPLIDEAALAEALREGRVR 262          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: A0A7C3D868_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7C3D868_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.140e-14
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            +VI+ SD+++V+A LTPET+G++G  E  R +P  V+I++GRGP++ EEA+  ALRDGR+R
Sbjct:  181 EVISASDFILVSAPLTPETRGLIGEAEFGRMRPGAVLINVGRGPVVQEEALIAALRDGRIR 241          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: A0A7X2TX30_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7X2TX30_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 5.360e-14
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            +++A  DY++ AA LT ET+G+VGA ELAR KP  V++++GRGP+IDEEA+  ALRDG ++
Sbjct:   97 EMMAGVDYLLAAAPLTGETRGLVGAAELARMKPSAVVLNVGRGPVIDEEALIAALRDGTIK 157          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: I2CQU9_NANGC (D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQU9_NANGC)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-13
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            ++IA+SDY++VAAALTP+T+G++ A ELA AKP  VII++GRGPL+ EE +  ALR+GR++
Sbjct:  283 ELIAQSDYLIVAAALTPDTRGIISAKELASAKPSLVIINMGRGPLLVEEDVIEALREGRVK 343          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: UPI001CC22DFE (2-hydroxyacid dehydrogenase n=1 Tax=Saccharopolyspora pogona TaxID=333966 RepID=UPI001CC22DFE)

HSP 1 Score: 72.8 bits (177), Expect = 1.150e-13
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    7 IAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDG 174
            +A+SD VVV+A L+PET G++GA ELAR  P +V+I++GRGPL+DEEA+  ALRDG
Sbjct:  201 LAESDIVVVSAPLSPETTGLIGAAELARMGPESVLINVGRGPLVDEEALYKALRDG 256          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: UPI0015D6F199 (D-2-hydroxyacid dehydrogenase n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0015D6F199)

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-13
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            D+I + DYVV AA LTPETKGM+GA E+A  KP  V++++GRGP+IDE+++  ALR  R+R
Sbjct:  194 DMIRECDYVVAAAPLTPETKGMIGAREIAAMKPSAVLMNVGRGPVIDEDSLVDALRSRRIR 254          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: A0A7S0AGD4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AGD4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.070e-12
Identity = 32/61 (52.46%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            ++++KSDY++VAA LT +TKG+V A  ++ +K  +VII++GRGP+IDEEA+  AL+DG L+
Sbjct:   51 ELMSKSDYILVAAPLTEDTKGLVSAEAISHSKDGSVIINVGRGPIIDEEALIAALQDGTLK 111          
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Match: A0A7V2HCJ3_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2HCJ3_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 2.480e-12
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEAMTLALRDGRLR 183
            +++A SD+V V + LTPET+G+VGA ELA  KP  VI+++GRGP+IDE A+  ALR+ R+R
Sbjct:  250 EMLAGSDFVAVCSPLTPETRGLVGAAELAVMKPSAVIMNVGRGPVIDEAALIEALREKRIR 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185534.5021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J663_9PHAE9.180e-2381.972-Hacid_dh_C domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KFZ0_9PHAE2.530e-2180.332-Hacid_dh_C domain-containing protein n=2 Tax=Ect... [more]
A0A835Z904_9STRA8.390e-2173.77D-isomer specific 2-hydroxyacid dehydrogenase n=1 ... [more]
A0A7C3D868_9BACT5.140e-1452.46D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteral... [more]
A0A7X2TX30_9BACT5.360e-1455.74D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteral... [more]
I2CQU9_NANGC1.120e-1359.02D-isomer specific 2-hydroxyacid dehydrogenase n=1 ... [more]
UPI001CC22DFE1.150e-1362.502-hydroxyacid dehydrogenase n=1 Tax=Saccharopolysp... [more]
UPI0015D6F1991.500e-1357.38D-2-hydroxyacid dehydrogenase n=1 Tax=Nevskia soli... [more]
A0A7S0AGD4_9STRA1.070e-1252.46Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7V2HCJ3_9BACT2.480e-1255.74D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185534contigH-elongata_contig185534:257..945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.7e-19
Seed eggNOG ortholog2880.D8LGJ7
EggNOG free text desc.hydroxypyruvate reductase activity
EggNOG OGsCOG1052@1,KOG0069@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.2590363-CDS-H-elongata_contig185534:256..3521622930061.2590363-CDS-H-elongata_contig185534:256..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185534 257..352 -
1691679265.8936386-CDS-H-elongata_contig185534:256..3521691679265.8936386-CDS-H-elongata_contig185534:256..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185534 257..352 -
1622930061.2716737-CDS-H-elongata_contig185534:855..9451622930061.2716737-CDS-H-elongata_contig185534:855..945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185534 856..945 -
1691679265.9031599-CDS-H-elongata_contig185534:855..9451691679265.9031599-CDS-H-elongata_contig185534:855..945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185534 856..945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185534.5021.1prot_H-elongata_contig185534.5021.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185534 257..945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185534.5021.1

>prot_H-elongata_contig185534.5021.1 ID=prot_H-elongata_contig185534.5021.1|Name=mRNA_H-elongata_contig185534.5021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
DVIAKSDYVVVAAALTPETKGMVGAVELARAKPHTVIISIGRGPLIDEEA
MTLALRDGRLR*
back to top

mRNA from alignment at H-elongata_contig185534:257..945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185534.5021.1 ID=mRNA_H-elongata_contig185534.5021.1|Name=mRNA_H-elongata_contig185534.5021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=689bp|location=Sequence derived from alignment at H-elongata_contig185534:257..945- (Himanthalia elongata Himel1 dioecious)
GACGTCATTGCGAAGTCGGACTACGTTGTGGTGGCTGCCGCCCTCACTCC CGAAACCAAGGGGATGGTTGGGGCGGTGGAGCTTGCCAGGGTGAGCGCGC GACAGACCGAAATGATGTTCCCGCAGAAACACCGCGATAGTAACACCCTC GAAATTTTGCGGTGTTGATCCTCTTGCCCATTGAGAGACCCAATATAGTT GCCGTAGCTTCGTGTCTGACCATCTCAAGAAACGAAAGGCGCCGAGCTGC CGCTTGTTGCTTGGAAAGTGGTATTCCTTTGAATGGACGGCTATTGGGTG AGGCGGGGGCGTAGGTAGGGTCGCGAGGGCACGCTTTGTGGTGGTCGCTT GTTTCTAGTAGGAGCGGAGCACTCATCGTGTATACCCCACATTAAGCTGA TTTTTCTCTCCCGTCCCGAGTCTATACATCCCTGGCCGCCGTACCAGAGC ACGTAAATATACCCCAAAAAGGTAGACCGTGCACTCATTCGTCGTTCAAG AGTCATGCGGATTCATACTACGTGTTCCGTTTTTTGGTGGGTGCGTGGGT GTGTTTTTGTCTGTCGGATCTTTGGTGGCGTCTTTGATGACAGGCCAAGC CGCACACGGTTATCATCAGCATCGGGAGGGGCCCCCTCATCGACGAGGAG GCAATGACGCTAGCGCTTCGAGACGGTCGCTTGCGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig185534:257..945-

>mRNA_H-elongata_contig185534.5021.1 ID=mRNA_H-elongata_contig185534.5021.1|Name=mRNA_H-elongata_contig185534.5021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig185534:257..945- (Himanthalia elongata Himel1 dioecious)
GACGTCATTGCGAAGTCGGACTACGTTGTGGTGGCTGCCGCCCTCACTCC
CGAAACCAAGGGGATGGTTGGGGCGGTGGAGCTTGCCAGGGACGTCATTG
CGAAGTCGGACTACGTTGTGGTGGCTGCCGCCCTCACTCCCGAAACCAAG
GGGATGGTTGGGGCGGTGGAGCTTGCCAGGGCCAAGCCGCACACGGTTAT
CATCAGCATCGGGAGGGGCCCCCTCATCGACGAGGAGGCAATGACGCTAG
CGCTTCGAGACGGTCGCTTGCGGTAAGCCAAGCCGCACACGGTTATCATC
AGCATCGGGAGGGGCCCCCTCATCGACGAGGAGGCAATGACGCTAGCGCT
TCGAGACGGTCGCTTGCGGTAA
back to top