prot_H-elongata_contig18551.5020.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18551.5020.1
Unique Nameprot_H-elongata_contig18551.5020.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length639
Homology
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: A0A6H5L3Q5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q5_9PHAE)

HSP 1 Score: 530 bits (1364), Expect = 1.120e-176
Identity = 431/643 (67.03%), Postives = 468/643 (72.78%), Query Frame = 0
Query:    1 MATVGKKKKAADNERISVLENARKQHNYHIGRLEQMLRLLDNNDLAPEQVEIISEDLDWYISQAGDDIDLIEKFECEDAYDLYEALNLDELAAPGAPPVVKGTKKLEALAEGDEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLPLTIGRPVVKSAKETAKTATPAVGVRPKTGAGGMPIIGRPVMSPAGPPLPAAPPSKVSKGPGLVDSPQCISINQQHQTAPGAQGHAMVGGGGRLLSAAAGPQTPN-QTPNQTIQSGTSTPIKMVRGALAPTDNLHTPQGQSGMAMVRTPPSGNAQLNNNAN-NSQTPSRQVXXXXXXXXXXPQPDHVPITSFNAVAGPSPRMNNPNQPALTQQXXXXXXXXXXXXXXXXXXXXXQXQPGVHQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMGQAGLKGKSKGNPLD-PTTG--LGAEDDQSGVPIGMTLGQPHNQHYNALGTPGTTRQSAEASGRAALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLEDEAL 638
            MA +GKKKKA D+ERI+ L+NARKQHNYHIGRLEQMLRLLDNNDLAP+QV+ I EDLDWYISQAGDDI LIEKFE ED+YDLYEAL LDELAAPGAPPVVKG KKL+  AEGDEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G+PL IGRPVVK+AK+ AKT+ PA G R +                      A P +KV+K PGL DSPQ  +I QQ     G    +  G     ++ AA   TP  QTP QT+QS T+TPIKM R   A  D +HTPQ Q G+ + RTPPS +A L+NNA  N  TPSRQ           PQP H    +F   AG   +   PN       XXXXXXXXXXXXXXXXXXXXX X       XXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXX   XX R GQ GLKG   G PLD P  G  + A+DD SGV +G+ LGQ    H+ AL   GT RQSAE+ GR ALE SMM KPQ  DSERAKPYVPRNPYRT  AFPSQPA AFEKP MFEKLNTDTLFLIFYYQQG+YQQYLAARELKRQSWRYHKKYMTWFQRHEEPK+TTD+YEQGTYVYFDYETGWCQRIKSDFRFDY FLEDEAL
Sbjct:  153 MAALGKKKKAKDDERINALDNARKQHNYHIGRLEQMLRLLDNNDLAPDQVDSIIEDLDWYISQAGDDIHLIEKFEAEDSYDLYEALELDELAAPGAPPVVKGNKKLDVFAEGDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GIPL-IGRPVVKNAKD-AKTSAPAAGGRQRATTTTXXXXXXXXXXXXA----AVPTAKVAKAPGLGDSPQA-TIQQQXXXXAGP---SPAGQQQSTMAVAARMGTPGPQTPGQTMQSATTTPIKMGRMTSAG-DAMHTPQRQQGVPVARTPPSASAALDNNAGTNVHTPSRQ---------GPPQPQHASPAAFQGAAGAG-QSPYPNNHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFSFPXXXXXXXXXXXXXXXXXXXXXXXXXAQAXXQRAGQPGLKG-DPGLPLDSPQMGAAIPADDDPSGVSMGLGLGQ----HHTAL---GTARQSAESGGRVALEQSMMFKPQSRDSERAKPYVPRNPYRTSTAFPSQPAEAFEKPHMFEKLNTDTLFLIFYYQQGSYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKVTTDDYEQGTYVYFDYETGWCQRIKSDFRFDYSFLEDEAL 763          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: D7G6Y4_ECTSI (Not3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y4_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 4.870e-64
Identity = 182/290 (62.76%), Postives = 203/290 (70.00%), Query Frame = 0
Query:    1 MATVGKKKKAADNERISVLENARKQHNYHIGRLEQMLRLLDNNDLAPEQVEIISEDLDWYISQAGDDIDLIEKFECEDAYDLYEALNLDELAAPGAPPVVKGTKKLEALAEGDEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLPLTIGRPVVKSAKETAKTATPAVGVRPKTGAGGMPIIGRPVMSPAGPPLPAAPPSKVSKGPGLVDSPQCISINQQHQTAPGAQGHAMVGGGGRLLSAAAGPQTPNQTPNQTIQSGTSTPIKMVRGALAPTDNLHTPQGQ 290
            MA +GKKKKA D+ERI+ L+NARKQHNYHIGRLEQMLRLLDNNDLAP+QV+ I EDLDWYISQAGDDI LIEKFE ED+YDLYEAL LDELAAPGAPPVVKG+KKL+  AEGDEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G+PL IGRPVVK+AK+ AKT+ PA G R +                      A P +KV+K PGL DSPQ  +  Q                     +A  G   P QTP QT+QS T+TPIKM R   A  D +HTPQ Q
Sbjct:  153 MAALGKKKKAKDDERINALDNARKQHNYHIGRLEQMLRLLDNNDLAPDQVDSIIEDLDWYISQAGDDIHLIEKFEAEDSYDLYEALELDELAAPGAPPVVKGSKKLDVYAEGDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GIPL-IGRPVVKNAKD-AKTSAPAAGGRQRATTXXXXXXXXXXXXXXA----AVPTAKVAKAPGLGDSPQAPT--QXXXXXXXXXXXXXXXXXXXXXAARMGTPGP-QTPGQTMQSATTTPIKMGRMTSA-ADAMHTPQRQ 429          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: A0A7S1ZND7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZND7_TRICV)

HSP 1 Score: 215 bits (547), Expect = 9.940e-63
Identity = 110/171 (64.33%), Postives = 122/171 (71.35%), Query Frame = 0
Query:  465 QSGVPIGMTLGQPHNQHYNALGTPGTTRQSAEASGRAALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLED 635
            +SG P         NQ   +   P      A AS   AL  S +  P   DSER + Y PRNPY TP ++PS P+  F+ P +FEKL TD LF IFYY QGTYQQYLAARELK+QSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+Y FLED
Sbjct:   13 RSGSPNDSAAAISPNQQQRSNSVPSNF--DATASYLGALNESFLHCPSNADSERQRTYTPRNPYPTPSSYPSVPSPIFDNPAVFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 181          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: A0A7S4BCF8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCF8_CHRCT)

HSP 1 Score: 221 bits (562), Expect = 1.610e-62
Identity = 113/185 (61.08%), Postives = 133/185 (71.89%), Query Frame = 0
Query:  454 DPTTGLGAEDDQSGVPIGMTLGQPHNQHYNALGTPGTTRQSAEASGRAA--LEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLEDE 636
            D +T  G + D+ G    +  G P      A+  P    +S EA+      L  S++  P+P DSER K YVPRNPY TP +FP  PA+ F+ P +FEK + DTLF IFYYQQGTYQQYLAARELK+QSWRYHKKY+TWFQRHEEPK+T DEYEQGTYVYFDYETGWCQRIKS+F F+Y FLEDE
Sbjct:  182 DASTSEGYDADKLGEIGNLGGGLP-----TAIAAPAAAHESQEANTHVLQMLNLSLLNMPEPSDSERPKTYVPRNPYPTPSSFPQTPASVFDAPAVFEKFDVDTLFFIFYYQQGTYQQYLAARELKKQSWRYHKKYLTWFQRHEEPKVTADEYEQGTYVYFDYETGWCQRIKSEFTFEYGFLEDE 361          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: F0YJK4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJK4_AURAN)

HSP 1 Score: 225 bits (573), Expect = 1.180e-61
Identity = 110/145 (75.86%), Postives = 122/145 (84.14%), Query Frame = 0
Query:  494 SAEASGRAALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLEDEAL 638
            SA A   AAL  SM   P+  DSER + YVPRNPY TPPAFPS PA+ F+  ++FEKL TDTLF IFYYQQGTYQQYLAA+ELK+QSWRYHKKYMTWFQRHEEPK+TTDE+EQGTYVYFDYETGWCQRIKSDF F+Y FLEDE +
Sbjct:  453 SASAHKLAALALSMRRAPRKADSERPRQYVPRNPYATPPAFPSTPASTFDDAKVFEKLGTDTLFFIFYYQQGTYQQYLAAKELKKQSWRYHKKYMTWFQRHEEPKVTTDEFEQGTYVYFDYETGWCQRIKSDFTFEYNFLEDELV 597          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: A0A7R9WE12_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE12_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.340e-61
Identity = 98/125 (78.40%), Postives = 107/125 (85.60%), Query Frame = 0
Query:  511 PQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLED 635
            P   DSER + Y PRNPY TP ++PS P+  F+ P +FEKL TD LF IFYY QGTYQQYLAARELK+QSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+Y FLED
Sbjct:    8 PSNADSERQRTYTPRNPYPTPSSYPSTPSQIFDNPAVFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 132          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: B8CE67_THAPS (NOT2_3_5 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CE67_THAPS)

HSP 1 Score: 207 bits (528), Expect = 1.400e-60
Identity = 99/134 (73.88%), Postives = 108/134 (80.60%), Query Frame = 0
Query:  502 ALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLED 635
            AL  S M  P   DSER + Y PRNPY TP  +P  P+  FE P +FEKL TD LF IFYY QGTYQQYLAARELK+QSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGW QRIK+DFRF+Y +LED
Sbjct:    3 ALNDSFMQMPTGADSERQRSYTPRNPYPTPSCYPQNPSPIFENPAVFEKLGTDALFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWTQRIKTDFRFEYSYLED 136          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: A0A6S8TWH2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8TWH2_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.620e-60
Identity = 102/135 (75.56%), Postives = 113/135 (83.70%), Query Frame = 0
Query:  501 AALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLED 635
            +AL  S +  P   DSERA+ Y PRNPY TP ++P+ P+  FE P +FEKL TD LF IFYY QGTYQQYLAARELK+QSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+Y FLED
Sbjct:  200 SALNQSFLHCPSNADSERARVYTPRNPYPTPSSYPASPSPIFENPAIFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 334          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: A0A8J2SF95_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF95_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.470e-58
Identity = 106/147 (72.11%), Postives = 120/147 (81.63%), Query Frame = 0
Query:  492 RQSAEASGRAALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLEDEAL 638
            R +AEA   AAL  SM   P+  D+ER + YVPRNPY TP AFP+QPAA F+   +F +L TDTLF +FYYQQGTYQQYLAARELK+QSWRYHKKYMTWFQRHEEPK TTD +EQGTYVYFDYETGWCQRIKSDF F+Y +LEDE +
Sbjct:  554 RAAAEARRLAALALSMRRAPRKRDAERPRQYVPRNPYATPAAFPTQPAAVFDGAAVFARLGTDTLFFVFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKATTDAFEQGTYVYFDYETGWCQRIKSDFTFEYAYLEDELV 700          
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Match: A0A7R9ZSK2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSK2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.240e-57
Identity = 94/135 (69.63%), Postives = 108/135 (80.00%), Query Frame = 0
Query:  502 ALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEKLNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLEDE 636
            AL  S    P   DSER + Y P+NPY T  ++P+ P++ FE P +FEKL TD LF IFYY QGTYQQYLAARELK+QSWR+HKKYMTWFQRHEEP +TTDEYEQGTYVYFDYETGWC RIK DFRF+Y +LED+
Sbjct:   37 ALNESFATMPTGSDSERGRHYTPQNPYATHSSYPAAPSSIFENPAVFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRFHKKYMTWFQRHEEPNVTTDEYEQGTYVYFDYETGWCTRIKQDFRFEYSYLEDQ 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18551.5020.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3Q5_9PHAE1.120e-17667.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Y4_ECTSI4.870e-6462.76Not3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1ZND7_TRICV9.940e-6364.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4BCF8_CHRCT1.610e-6261.08Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
F0YJK4_AURAN1.180e-6175.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7R9WE12_9STRA4.340e-6178.40Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8CE67_THAPS1.400e-6073.88NOT2_3_5 domain-containing protein (Fragment) n=1 ... [more]
A0A6S8TWH2_9STRA1.620e-6075.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8J2SF95_9STRA3.470e-5872.11Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7R9ZSK2_9STRA1.240e-5769.63Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007207CCR4-Not complex component, Not N-terminal domainPFAMPF04065Not3coord: 6..89
e-value: 2.2E-12
score: 46.9
IPR007282NOT2/NOT3/NOT5, C-terminalPFAMPF04153NOT2_3_5coord: 506..632
e-value: 9.4E-44
score: 148.7
IPR012270CCR4-NOT complex, subunit 3/ 5PIRSFPIRSF005290NOT_su_3_5coord: 1..638
e-value: 1.4E-94
score: 316.0
IPR038635CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamilyGENE3D2.30.30.1020coord: 490..634
e-value: 8.7E-58
score: 196.5
NoneNo IPR availablePANTHERPTHR23326:SF1CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3coord: 6..636
IPR040168Not2/Not3/Not5PANTHERPTHR23326CCR4 NOT-RELATEDcoord: 6..636

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18551contigH-elongata_contig18551:494..7108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18551.5020.1mRNA_H-elongata_contig18551.5020.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18551 494..7108 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18551.5020.1 ID=prot_H-elongata_contig18551.5020.1|Name=mRNA_H-elongata_contig18551.5020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=639bp
MATVGKKKKAADNERISVLENARKQHNYHIGRLEQMLRLLDNNDLAPEQV
EIISEDLDWYISQAGDDIDLIEKFECEDAYDLYEALNLDELAAPGAPPVV
KGTKKLEALAEGDEEDGDGDGGGADEAPAAATKLRGKKGKAAAAAAAAGG
LPLTIGRPVVKSAKETAKTATPAVGVRPKTGAGGMPIIGRPVMSPAGPPL
PAAPPSKVSKGPGLVDSPQCISINQQHQTAPGAQGHAMVGGGGRLLSAAA
GPQTPNQTPNQTIQSGTSTPIKMVRGALAPTDNLHTPQGQSGMAMVRTPP
SGNAQLNNNANNSQTPSRQVGPQQHQQQHQPQPDHVPITSFNAVAGPSPR
MNNPNQPALTQQQQQQQQLQQPLQQHHQQQHHNQQQPGVHQKQQQHQPQQ
QHQHQQQQHQHQQMQPHQQQQQQAAHQQQQQQHQQPQRMGQAGLKGKSKG
NPLDPTTGLGAEDDQSGVPIGMTLGQPHNQHYNALGTPGTTRQSAEASGR
AALEHSMMLKPQPEDSERAKPYVPRNPYRTPPAFPSQPAAAFEKPQMFEK
LNTDTLFLIFYYQQGTYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKIT
TDEYEQGTYVYFDYETGWCQRIKSDFRFDYVFLEDEAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007207Not_N
IPR007282NOT2/3/5_C
IPR012270CCR4-NOT_su3/5
IPR038635CCR4-NOT_su2/3/5_N_sf
IPR040168Not2/3/5