mRNA_H-elongata_contig185503.5019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185503.5019.1
Unique NamemRNA_H-elongata_contig185503.5019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185503.5019.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.510e-16
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 IVSTVKKVHGKLGQHAEAIDCYRRSIAVRPAAPAYVAWALVVAKLAERAARKRSTKSVRLRPR 189
            ++ T+  VHGKLG++ EAI+CYRRSIA+ PAAPAYVAWALVVAKLAERA R  S+K     P+
Sbjct:  445 LLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKTAAGPK 507
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BLAST of mRNA_H-elongata_contig185503.5019.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.550e-16
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 IVSTVKKVHGKLGQHAEAIDCYRRSIAVRPAAPAYVAWALVVAKLAERAARKRSTK 168
            ++ T+  VHGKLG++ EAI+CYRRSIA+ PAAPAYVAWALVVAKLAERA R  S+K
Sbjct:  524 LLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSK 579
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185503.5019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1I2_ECTSI3.510e-1665.08PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A6H5L0Y9_9PHAE6.550e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185503contigH-elongata_contig185503:366..578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D7G1I2
Preferred nameTTC6
KEGG rclassRC00002,RC00078
KEGG koko:K00951,ko:K12869
KEGG ReactionR00429
KEGG Pathwayko00230,ko03040,map00230,map03040
KEGG ModuleM00355
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
EC2.7.6.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPsbB mRNA maturation factor Mbb1, chloroplast precursor
Ec32 orthologEc-07_001100.1
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.0317907-CDS-H-elongata_contig185503:365..5781622930061.0317907-CDS-H-elongata_contig185503:365..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185503 366..578 +
1691679265.784684-CDS-H-elongata_contig185503:365..5781691679265.784684-CDS-H-elongata_contig185503:365..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185503 366..578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185503.5019.1prot_H-elongata_contig185503.5019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185503 366..578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185503.5019.1

>prot_H-elongata_contig185503.5019.1 ID=prot_H-elongata_contig185503.5019.1|Name=mRNA_H-elongata_contig185503.5019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
IVSTVKKVHGKLGQHAEAIDCYRRSIAVRPAAPAYVAWALVVAKLAERAA
RKRSTKSVRLRPRVSFFFSV*
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mRNA from alignment at H-elongata_contig185503:366..578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185503.5019.1 ID=mRNA_H-elongata_contig185503.5019.1|Name=mRNA_H-elongata_contig185503.5019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig185503:366..578+ (Himanthalia elongata Himel1 dioecious)
ATCGTCTCTACCGTCAAAAAGGTCCACGGAAAGCTAGGGCAGCACGCCGA
GGCCATCGATTGCTACCGTCGTAGCATCGCCGTTCGACCGGCGGCGCCCG
CCTACGTTGCCTGGGCGCTGGTCGTTGCCAAGCTGGCCGAACGCGCGGCG
AGGAAGCGGTCCACCAAGTCGGTAAGGCTACGTCCACGCGTGAGTTTTTT
TTTTTCTGTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig185503:366..578+

>mRNA_H-elongata_contig185503.5019.1 ID=mRNA_H-elongata_contig185503.5019.1|Name=mRNA_H-elongata_contig185503.5019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig185503:366..578+ (Himanthalia elongata Himel1 dioecious)
ATCGTCTCTACCGTCAAAAAGGTCCACGGAAAGCTAGGGCAGCACGCCGA
GGCCATCGATTGCTACCGTCGTAGCATCGCCGTTCGACCGGCGGCGCCCG
CCTACGTTGCCTGGGCGCTGGTCGTTGCCAAGCTGGCCGAACGCGCGGCG
AGGAAGCGGTCCACCAAGTCGGTAAGGCTACGTCCACGCGTGAGTTTTTT
TTTTTCTGTGTAAATCGTCTCTACCGTCAAAAAGGTCCACGGAAAGCTAG
GGCAGCACGCCGAGGCCATCGATTGCTACCGTCGTAGCATCGCCGTTCGA
CCGGCGGCGCCCGCCTACGTTGCCTGGGCGCTGGTCGTTGCCAAGCTGGC
CGAACGCGCGGCGAGGAAGCGGTCCACCAAGTCGGTAAGGCTACGTCCAC
GCGTGAGTTTTTTTTTTTCTGTGTAA
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