mRNA_H-elongata_contig185454.5013.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185454.5013.1
Unique NamemRNA_H-elongata_contig185454.5013.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BDE4E (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BDE4E)

HSP 1 Score: 95.5 bits (236), Expect = 2.850e-22
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            LS + SPQTD EVEEM QIPY+E VGAL++ +T TRPDIS+A  Q+AKFN NP   HW+A ++  +YL  TR+ GI +
Sbjct:   17 LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILF 94          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0)

HSP 1 Score: 93.6 bits (231), Expect = 3.250e-22
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   16 SPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            SPQTD EVEEM QIPY+E VGAL++ +T TRPDIS+A  Q+AKFN NP   HW+A ++  +YL  TR+ GI +
Sbjct:    2 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFF 74          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB)

HSP 1 Score: 95.5 bits (236), Expect = 1.850e-21
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            LS + SPQTD EVEEM QIPY+E VGAL++ +T TRPDIS+A  Q+AKFN NP   HW+A ++  +YL  TR+ GI +
Sbjct:  260 LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILF 337          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 90.5 bits (223), Expect = 1.900e-19
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            LSKS SPQT  EVEEM +IPY   VG+L++ ATMTRPDI++ A  LA+FN NP   HW+A +  L+YL  T D+ + Y
Sbjct:  366 LSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEY 443          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A284S2Y9_ARMOS (Uncharacterized protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S2Y9_ARMOS)

HSP 1 Score: 89.4 bits (220), Expect = 4.980e-19
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            +S+   P T ++V +M  +PYRE++G L+W +T TRPD++F    L++F DNP   HW AA++ LQYL  TR LG+TY
Sbjct: 1193 ISREQCPNTPSDVADMRDVPYRELIGGLIWLSTATRPDLAFTVCVLSRFLDNPGRPHWNAAKRVLQYLKGTRTLGLTY 1270          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A8H7F248_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F248_AGABI)

HSP 1 Score: 89.0 bits (219), Expect = 6.810e-19
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            LS  DSP+TDAE  EM  IPYRE++G+LMW    TRPD+SFA   L++F +NP   HW A +  L Y+  T   GITY
Sbjct: 1213 LSIEDSPKTDAEKAEMANIPYREVLGSLMWLQVATRPDLSFAVNMLSRFANNPGRAHWEAMKHTLAYVKSTTHYGITY 1290          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: M2QFN1_CERS8 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2QFN1_CERS8)

HSP 1 Score: 88.2 bits (217), Expect = 7.730e-19
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGI 228
            L+K D P+   E ++M + PYRE++GAL W + ++RPDISFA   LA+FN +P P HWRAA++ LQYL  TRD  +
Sbjct:  150 LTKDDGPKNAQEADDMKRRPYRELLGALTWISVISRPDISFAVNNLAQFNADPGPKHWRAAKRILQYLTGTRDYRL 225          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31)

HSP 1 Score: 85.9 bits (211), Expect = 1.270e-18
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            L+ S SPQ   E EEM  IPY+E VGAL++ +T TRPDIS+A  Q+AKF+ NP   HW+A ++ ++Y+  TR  GI Y
Sbjct:   17 LTSSMSPQQQKEKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILY 94          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A4S4KZ61_9AGAM (Uncharacterized protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KZ61_9AGAM)

HSP 1 Score: 84.0 bits (206), Expect = 1.460e-18
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            LSK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NP P HW+AA+   +YL  T+D+ +TY
Sbjct:   10 LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTY 87          
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 84.0 bits (206), Expect = 2.120e-18
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFNDNPRPTHWRAAQKALQYLWRTRDLGITY 234
            LSK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NP P HW+AA+   +YL  T+D+ +TY
Sbjct:   80 LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTY 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185454.5013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BDE4E2.850e-2257.69secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001E1BB9B03.250e-2258.90secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001E1BA9BB1.850e-2157.69uncharacterized protein LOC116922675 n=1 Tax=Daphn... [more]
E2LZP6_MONPE1.900e-1955.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284S2Y9_ARMOS4.980e-1947.44Uncharacterized protein n=2 Tax=Armillaria ostoyae... [more]
A0A8H7F248_AGABI6.810e-1952.56Integrase catalytic domain-containing protein n=1 ... [more]
M2QFN1_CERS87.730e-1951.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BCD311.270e-1851.28secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A4S4KZ61_9AGAM1.460e-1848.72Uncharacterized protein (Fragment) n=2 Tax=Phellin... [more]
A0A4S4K4A0_9AGAM2.120e-1848.72Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185454contigH-elongata_contig185454:900..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue7e-15
Seed eggNOG ortholog67593.Physo130920
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH7N@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.5138454-CDS-H-elongata_contig185454:899..11331622930060.5138454-CDS-H-elongata_contig185454:899..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185454 900..1133 -
1691679265.5551116-CDS-H-elongata_contig185454:899..11331691679265.5551116-CDS-H-elongata_contig185454:899..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185454 900..1133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185454.5013.1prot_H-elongata_contig185454.5013.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185454 900..1133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185454.5013.1

>prot_H-elongata_contig185454.5013.1 ID=prot_H-elongata_contig185454.5013.1|Name=mRNA_H-elongata_contig185454.5013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
LSKSDSPQTDAEVEEMLQIPYREIVGALMWAATMTRPDISFAAYQLAKFN
DNPRPTHWRAAQKALQYLWRTRDLGITY
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mRNA from alignment at H-elongata_contig185454:900..1133-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185454.5013.1 ID=mRNA_H-elongata_contig185454.5013.1|Name=mRNA_H-elongata_contig185454.5013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig185454:900..1133- (Himanthalia elongata Himel1 dioecious)
CTTTCAAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCT CCAAATTCCCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGA TGACCAGGCCCGACATTTCATTCGCTGCGTACCAACTGGCAAAATTCAAC GACAACCCGCGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATA CTTATGGCGCACTCGGGACCTCGGGATCACCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig185454:900..1133-

>mRNA_H-elongata_contig185454.5013.1 ID=mRNA_H-elongata_contig185454.5013.1|Name=mRNA_H-elongata_contig185454.5013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig185454:900..1133- (Himanthalia elongata Himel1 dioecious)
CTTTCAAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCT
CCAAATTCCCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGA
TGACCAGGCCCGACATTTCATTCGCTGCGTACCAACTGGCAAAATTCAAC
GACAACCCGCGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATA
CTTATGGCGCACTCGGGACCTCGGGATCACCTACCTTTCAAAATCAGACA
GCCCGCAAACGGACGCAGAGGTTGAAGAAATGCTCCAAATTCCCTACCGA
GAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACAT
TTCATTCGCTGCGTACCAACTGGCAAAATTCAACGACAACCCGCGACCGA
CACACTGGAGGGCAGCCCAGAAAGCGCTGCAATACTTATGGCGCACTCGG
GACCTCGGGATCACCTAC
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