mRNA_H-elongata_contig1062.501.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.510e-9 Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 4 APAYDEFDDKIFPI-VTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
AP D D I V ++ +S YGL Q+ + + TI E LV I F+ +SDPC+YI + ILTLYV+ +L+ GKD ++ +K+ L
Sbjct: 508 APGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKEL 598
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A7D9H832_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9H832_PARCT) HSP 1 Score: 55.1 bits (131), Expect = 6.910e-7 Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1
Query: 43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
+V R+ +S YGL Q+ S + L + F + DPC+Y+K E G I I+ +YVD +LL GK+ + +KQ L
Sbjct: 97 LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQITGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKIIEVKQAL 173
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 55.1 bits (131), Expect = 9.540e-7 Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
+V R+ +S YGL Q+ S + L + F DPC+Y+K E G I I+ +YVD +LL GK+ + +KQ L
Sbjct: 123 LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQAL 199
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A512UFU4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UFU4_9ASCO) HSP 1 Score: 55.1 bits (131), Expect = 9.890e-7 Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 52 RILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
++ KS YGL Q + TI L++ FK+ ++PCLY K + +L LYVD +L+ GKD + + +KQ+L
Sbjct: 1327 KLNKSLYGLKQAPLVWNQTIDAALIKFGFKANVNEPCLYFKGSGSSLIVLALYVDDMLIFGKDESEISKVKQSL 1400
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 1.190e-6 Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
+V ++ +S YGL Q+ + T+ + L +K +SDPC+Y+ + +I ILT+YVD +L+ G+D ++ K+ L
Sbjct: 1 MVYKLERSLYGLSQSPALWSDTLDKSLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGRDQQLVDQKKKEL 77
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 1.310e-6 Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
IV ++ +S YG Q+ + + T+ + LV I F+ + PC++I G + ILTLYVD +L+ GKD ++ G+K+ L
Sbjct: 573 IVYKLERSHYGRSQSPVLWFDTMGDVLVVIGFRP--THPCVFIYGSGGTLVILTLYVDDILISGKDPELVAGLKKEL 647
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6S7HUF2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HUF2_PARCT) HSP 1 Score: 53.9 bits (128), Expect = 2.200e-6 Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
+V R+ +S Y L Q+ S + L + F DPC+YIK E G I I+ +YVD +LL GK+ + +KQ L
Sbjct: 102 LVCRLRRSIYDLKQSPCCWNSVLDRKLKNMGFVQTTDDPCIYIKEEGGEIFIIAMYVDDILLAGKNGQKINEVKQAL 178
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6S7IKL3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IKL3_PARCT) HSP 1 Score: 53.5 bits (127), Expect = 3.360e-6 Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
+V R+ +S YGL ++ S + L + F DPC+Y+K E G I I+ +YVD +LL GK+ + +KQ L
Sbjct: 653 LVCRLRRSIYGLKKSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQAL 729
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 51.6 bits (122), Expect = 1.580e-5 Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
+V R+ +S GL Q+ S + L + F DPC+Y+K E G I I+ +YVD +LL GK+ + +KQ L
Sbjct: 271 LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQAL 347
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A512UHB7_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UHB7_9ASCO) HSP 1 Score: 51.2 bits (121), Expect = 2.240e-5 Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 46 VTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
V R+ KS YGL Q + T++ L + FK ++PCLY K + + ++ LYVD +L+ GKD + +K+ L
Sbjct: 1295 VLRLNKSLYGLKQAPLVWNKTMNAELEKQGFKGAVNEPCLYYKGQGSSLIVIALYVDDLLIFGKDETEILRVKRDL 1370 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1062.501.1 >prot_H-elongata_contig1062.501.1 ID=prot_H-elongata_contig1062.501.1|Name=mRNA_H-elongata_contig1062.501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp MAPAYDEFDDKIFPIVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKback to top mRNA from alignment at H-elongata_contig1062:11301..11576+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1062.501.1 ID=mRNA_H-elongata_contig1062.501.1|Name=mRNA_H-elongata_contig1062.501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig1062:11301..11576+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1062:11301..11576+ >mRNA_H-elongata_contig1062.501.1 ID=mRNA_H-elongata_contig1062.501.1|Name=mRNA_H-elongata_contig1062.501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig1062:11301..11576+ (Himanthalia elongata Himel1 dioecious)back to top |