mRNA_H-elongata_contig1854.5010.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1854.5010.1
Unique NamemRNA_H-elongata_contig1854.5010.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 7.690e-84
Identity = 183/411 (44.53%), Postives = 225/411 (54.74%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQIPPHSGGHVV--------------------WRAGEEVLRPAGVNALALGELEASPQQRKHHQAE----PEHLDAGRLQVPPRRSFHRRPPEEVQHHRHPDPGRVDSSPPAAGTHAQQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMSTNPIVTAEK*LEGTLLPPSGGGGSDSDVELLD 1161
            M WAT++ LR ALV R+GEIYA R+P  PDESPI  EDL SEQL  V  EVF+ELGNMDQ P+QH++PVET LEK GAKDARISTGGKEKE FTL LA        S      G        +G+G+++     L R     WE++       GH                      W +G   LRP   + +            K H+ E        DA  + +     F               PGR+            + MKRL+RRK TAY+ +A  DAR+GKLKP  RG+VSTWCK++W + TP+ VK  F ICGLTLALDGSED AWC HNFGE Y  LL++QR  W A H  VTLPPL+LP+V  G    +NPI  A+K +EG LLP      SDS+VE+L+
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKST-----LPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVI-----F--------------IPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVADE-SDSEVEVLE 446          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 7.380e-79
Identity = 184/405 (45.43%), Postives = 222/405 (54.81%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQIPPHS---GGHVVWRAGE---EVLRPAGVN-ALALGELEASPQQRKHHQAEPEHLDAGRLQVPPRRSFHRRPPE-EVQHHRHPD---------------PGRVDSSPPAAGTHAQQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMSTNPIVTAEK*LEGTLLPPSGGGGSDSD 1146
            + +ATL+ LRTAL++R+GEIYA RNP    ESPI  +DL   QLE V  EVF+ELGNMDQ P+Q +MPVET LEK GAKDARISTGGKEKE FTLCLA                     AD           + + + +        IPP +   G +   R G    EVL     N    +  +    Q+R  +       DA    +    S+  RP    V   RH                 PG +            + MKRLMRR+ T Y  +A  D +TGKL+P GRG+VSTWCK+SWAA+T + VK+ FK+CGLTLALDGSED AWC HNFGEGY ++L QQR EW A  PGVTLPPLQLPEV+   A   NPI TAEK +   LLPP G    DSD
Sbjct:  236 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAV-------------------MAD-----GGKVPLRIIFKGKPF------IPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWY-------DACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRTNTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTGKLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSEDDAWCTHNFGEGYREVLVQQRAEWGAQRPGVTLPPLQLPEVSS--ASGANPIATAEKEVTAKLLPPEG----DSD 597          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 7.610e-74
Identity = 186/444 (41.89%), Postives = 230/444 (51.80%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTG--------------------------GKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQIPPHSGGHVVWRAGEEVLRPAGVNALALGELEASPQQRKHHQAEPEHLDAGRLQVPPRRSFHRRPPEE--VQHHR----------HPDPGRVDSSPPAAGTHA------------------QQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMST-NPIVTAEK*LEGTLLPPSGGGGSDSDVELLD 1161
            M WATL+ LR AL++R+GEIYA R P  P ESPI  EDL S QLE VT E+F++LGNMDQ P+Q++MPVET LEK GAKDARI+TG                          GKEKE FTLCLA               G         G+G+A+       R     WE+  +P +   H +            V  ++ G  E S              D    ++  + S+  RP     V+  R          H D G + +    A T                     + MKRL+R   TA+T  AA D +TGKL P GRG V+TWCK++WA++TP+ VK  FKICGLTLALDGSED AWC+HNFG+GY +LL+QQRVEW A HP VTLPPLQLP+V    A ST N I  A K LE  LLP     G DSD+E+ D
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQP-----RKNSIAWEV--LPANRSKHGL-----------PVGGMSFGVQEKS------------WCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP---AESTANHIEAAAKELEAGLLPR----GDDSDIEIED 556          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.910e-72
Identity = 177/452 (39.16%), Postives = 221/452 (48.89%), Query Frame = 1
Query:   16 LINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQIPPHSGGHVV--------------------WRAGEEVLRPAGVNA-------LALGELEASPQQRKHHQAEPEHLDAGRLQVPPRRSFHRRPPEEVQHHRHPDPGRVDSSPPAAGTHAQQAM--------KRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGE---------------------------------AMSTNPIVTAEK*LEGTLLP--PSGGGGSDSDVELLD 1161
            ++ LR ALV R+GEIYA R+P  PDESPI  EDL SEQL  V  EVF++LGNMDQ P+QH+MPVET LEK GAKDAR+STGG+EKE FTL LA        S      G        +G+G+++     L R     WE++       GH                      W +G   LRP   +        L L + +              H D G +    R                 D   +    P   T   Q +        KRL+R K TAY+  +A DAR+GKLKP  RG+VSTWCK +W ++TP+ VK  FKICGLTLALDGSED AWC HNFGE Y  LL++Q   W A HP VTLPPL+LP+V                                        +NPI+ A+K +EG LLP  P     SDS+VE+L+
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKST-----LPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKC-------------HKDEGFIAALKR-----------------DANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSA-SATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDSNPIMAAQKEVEGKLLPYVPDE---SDSEVEVLE 414          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 2.790e-72
Identity = 177/415 (42.65%), Postives = 223/415 (53.73%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQI-PPHSGGH----------VVWRAGEEVLRPAG--------VNALALGELEASPQQRKHHQAEPE---------HLDAGRLQVPPRRSFHRRPPEEVQHHRHPDPGRVDSSPPAAGTHAQQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMSTNPIVTAEK*LEGTLLPPSGGGGSDSDVELLD 1161
            M WAT++ LR ALV R+GEIYA R+P  PDESPI  EDL SEQL  V  EVF+ELGNMDQ P+QH+MPVET LEK GAKDARISTGG+EKE FTL LA        S      G        +G+ +++     L R     WE++      SG H          ++++ G   + P           N    G  +  P      Q  P          H D G +    R +      + V       PG + S          + MKRL+R K TA + +A  DAR+GKL P   G+VSTWCK++W ++T   V+  FKICGLTLALDGSE  AWC HNFGE Y  LL++Q   W A HP  TLPPL+LP+V  G    +NPI  A+K +EG LLP      SDS+VE+L+
Sbjct:  245 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKST-----LPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFK-GTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGA------KTVIF----IPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVADARSGKLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHHAWCEHNFGEDYGDLLEEQHAVWLAEHPDDTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVADE-SDSEVEVLE 640          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5KVR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR1_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 4.150e-71
Identity = 174/404 (43.07%), Postives = 216/404 (53.47%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQIPPHSGGHVVWRAGEEVLRPAGVNALALGELEASPQQRKHHQAEPEHLDAGRLQVPPRRSFHRRPPEEVQHHRHPDPGRVDSSPPAAGT----------------HAQQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMST-NPIVTAEK*LEGTLLPPSGGGGSDSDVELLD 1161
            M W TL+ LR AL++R+GEIYA R P  P ESPI  EDL S QLE VT E+F+ELGNMDQ P+QH+MPVET LEK G KDARI+TGG                     A H  G    S    G+G+A+       R     WE+  +P +   H +            V  ++ G  E S              D    ++  + S+  RP      H+  D G + +    A T                      +RL+R   TA+T  A  D +TGKL P GRG V+TWCK++WA++TP+ VK  FKICGLTLALDGSED AWC+HNFG+GY +LL+QQRVEW A HP VTLPPLQLP+V    A ST N I  A K LE  LLP     G DSD+E+ D
Sbjct:  270 MAWTTLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKTGVKDARIATGGP--------------------AAHFKGTPFVSPATPGKGKATQP-----RKNSIAWEV--LPANRSKHGL-----------PVGGMSFGVQEKS------------WCDLRECKLWIKDSWELRPNNGSICHK--DDGFIAALKREASTIVIFIPGGLTPLLQPLDRMLNKQRLLRGMYTAHTAKAVRDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP---AESTANHIEAAAKELEEWLLPR----GDDSDIEIED 614          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 2.920e-67
Identity = 179/414 (43.24%), Postives = 219/414 (52.90%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQIP---PHSGGHVVWRAGEEVLRPAGVNALALGELEASPQQRKHHQAEPEHLDAGRLQVPPRRSFHRRPP-----EEVQHHRHPDPGRVDSSPPAAGTHA------------------QQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMST-NPIVTAEK*LEGTLLPPSGGGGSDSDVELLD 1161
            M WATL+ LR AL++R+GEIYA R P  P ESPI  EDL S QLE VT E+F+ELGNMDQ P+QH+MPVET LEK GAKDARI+TG  EK       A   RR + S        A  S                             P   P +G    W A      P+GV   +  +L       K         D+ +L+ P   S  R+       ++ + H+  D G + +    A T                     + MKRL+R   TA T  AA D +TG L P GRG V+TWCK++WA++TP+ VK  FKICGLTLALDGSED AWC+HNFG+GY +LL+QQRVEW A HP VTLP LQLP+V    A ST N I  A K LE  LLP     G DSD+E+ D
Sbjct:  212 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKAGAKDARIATGAGEKRRNASRSAWLPRRMARSRL------ASSSRVRLSFRLPRPGXXXXXXXXXXXXXXXYFPRTAPSTGS--PWEAC-----PSGVQEKSWCDLRECKLWIK---------DSWKLR-PNNGSIVRQRRCILVLDDFKCHK--DDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVP---AESTANHIEAAAKELEAGLLPC----GDDSDIEIED 593          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 2.150e-65
Identity = 193/493 (39.15%), Postives = 236/493 (47.87%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQA------SSATQELHRDRDCH------------------------W--ELYQIPPHSGGHVVWRAGEEVLR-------------------------PAGVNALALGELEASPQQRK---------HHQAEPEHLDAGRLQVPPRR---------SFHRRPPEEVQ------------------------------HHRHPDPGRVDSSPPAAGTHAQQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMST-NPIVTAEK*LEGTLLPPSGGGGSDSDVELLD 1161
            M WATL+ LR AL++R+GEIYA R P  P ESPI  EDL S QLE VT E+F+ELGNMDQ P+QH+MPVET LE  GAKDARI+TGGKEKE FTLCLA               G         G+G+A      S A + L  +R  H                        W  + +++ P++G  V  R    VL                          P G+  L         +Q K         H          G+L VPP R         ++    PE V+                                                    + MKRL+R   TA+T  AA D + GKL P GRG V+TWCK++WA++TP++VK  FKICGLTLALDGSED AWC+HNFG+GY +LL+QQRVEW A HP VTLPPLQLP+V    A ST N I  A K LE  LLP     G DSD+E+ D
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKL-VPPGRGAVATWCKNAWASITPEIVKTCFKICGLTLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKPGKLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP---AESTANHIEAAAKELEAGLLPR----GDDSDIEIED 701          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 6.390e-65
Identity = 181/474 (38.19%), Postives = 229/474 (48.31%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACH-----------------------GRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRD------RDCH-W--ELYQIPPHSGGHVVWRAGEEVLRPAGVNALALGELEASPQQRKHHQAEPEHLDAGRLQVPPRRSFHRRPPEEVQHHRHPDPGRVDSSPPAAGTHAQQAMKRLMR------------------------------------------------RKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMSTNPIVTAEK*LEGTLLPPSGGGGSDSDVELLDDGIDLKV 1182
            + +ATL+ LRTAL++R+GEIYA RNP    ESPI  +DL   QLE V  +VF+ELGNMDQ P+Q +MPVET LEKRG KDARISTGGKEK+ FT CLA                         GR  +  +        V  A+    G   S    + ++      R+C  W  E ++  P+ G  +  R           + L L +          H++E    D             RR    V       PG +            + MKRLMR                                                   T Y  +A  D +TGKL+P GRG+VST  K+SWAA+TP+ VK+ FK+CGLTLALDGSED AW  HNFGEGY ++L QQ  EWEA HPGVTLPPLQLPEV+   A   NPI TAEK +   LLPP G   SD +VE++D   D+++
Sbjct:  132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRH----------SILVLDDFRC-------HRSESFVKD-----------LRRRTNTTVIL----IPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADPKTGKLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSEDDAWGTHNFGEGYREVLVQQHAEWEAQHPGVTLPPLQLPEVSS--APGANPIATAEKEVTAKLLPPEGD--SDDEVEIIDGDSDVEL 569          
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.310e-63
Identity = 168/418 (40.19%), Postives = 214/418 (51.20%), Query Frame = 1
Query:    1 MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVEVFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACHGRR*SGSSAHHL*GHAVHSADHAGEGQASSATQELHRDRDCHWELYQIPPHSGGHVVWRAGEEVLRPAGVNALALGELEASPQQRKHHQAEPEHLDAGRLQVPPRRSFHRRPPEE--VQHHR----------HPDPGRVDSSPPAAGTHA------------------QQAMKRLMRRKDTAYTTTAAIDARTGKLKPLGRGMVSTWCKDSWAAVTPDVVKIFFKICGLTLALDGSEDAAWCVHNFGEGYCQLLQQQRVEWEAAHPGVTLPPLQLPEVTKGEAMST-NPIVTAEK*LEGTLLPPSGGGGSDSDVELLD 1161
            M WATL+ LR AL++R+G+IYA R P  P E+PI  EDL S QLE VT E+F+ELGNMDQ P+QH+ PVE   +    +  R       +E FTLCLA               G         G+G+A+       R     WE+  +P +   H +            V  ++ G  E S              D    ++  + S+  RP     V+  R          H D G + +    A T                     + MKRL+R   TA+T  AA D +TGKL P GRG V+TWCK++WA++TP+  K  FKICGLTLALDGSED AWC+HNFG+GY +LL+QQRVEW A HP VTLPPLQLP+V    A ST N I  A K LE  LLP     G DSD+E+ D
Sbjct:  187 MAWATLMKLRKALLERAGKIYAQRYPPAPGENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVERLWK----RPVRRMPASPPEERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQP-----RKNSIAWEV--LPANRSKHGL-----------PVGGMSFGVQEKS------------WCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP---AESTANHIEAAAKELEAGLLPR----GDDSDIEIED 563          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1854.5010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6L9_9PHAE7.690e-8444.53DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE7.380e-7945.43DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE7.610e-7441.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE1.910e-7239.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE2.790e-7242.65DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KVR1_9PHAE4.150e-7143.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYG9_9PHAE2.920e-6743.24DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE2.150e-6539.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE6.390e-6538.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRZ1_9PHAE2.310e-6340.19DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1854contigH-elongata_contig1854:4791..7001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue9e-34
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size1779
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1854.5010.1prot_H-elongata_contig1854.5010.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1854 4791..5534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.2966645-CDS-H-elongata_contig1854:4790..50491622930060.2966645-CDS-H-elongata_contig1854:4790..5049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1854 4791..5049 +
1691679265.4593682-CDS-H-elongata_contig1854:4790..50491691679265.4593682-CDS-H-elongata_contig1854:4790..5049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1854 4791..5049 +
1622930060.3187973-CDS-H-elongata_contig1854:5481..55341622930060.3187973-CDS-H-elongata_contig1854:5481..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1854 5482..5534 +
1691679265.4696798-CDS-H-elongata_contig1854:5481..55341691679265.4696798-CDS-H-elongata_contig1854:5481..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1854 5482..5534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.3367925-UTR-H-elongata_contig1854:5534..70011622930060.3367925-UTR-H-elongata_contig1854:5534..7001Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1854 5535..7001 +
1691679265.4776385-UTR-H-elongata_contig1854:5534..70011691679265.4776385-UTR-H-elongata_contig1854:5534..7001Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1854 5535..7001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1854.5010.1

>prot_H-elongata_contig1854.5010.1 ID=prot_H-elongata_contig1854.5010.1|Name=mRNA_H-elongata_contig1854.5010.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MTWATLINLRTALVDRSGEIYAGRNPCTPDESPIDREDLISEQLEPVTVE
VFQELGNMDQMPIQHKMPVETALEKRGAKDARISTGGKEKEHFTLCLACH
GRR*
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mRNA from alignment at H-elongata_contig1854:4791..7001+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1854.5010.1 ID=mRNA_H-elongata_contig1854.5010.1|Name=mRNA_H-elongata_contig1854.5010.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2211bp|location=Sequence derived from alignment at H-elongata_contig1854:4791..7001+ (Himanthalia elongata Himel1 dioecious)
ATGACGTGGGCGACATTGATTAATCTTCGGACGGCTCTCGTGGACCGCTC TGGCGAAATCTACGCGGGGCGAAACCCGTGTACACCTGATGAGAGCCCTA TCGACCGGGAGGACCTGATTTCCGAGCAGCTGGAGCCGGTGACCGTCGAG GTTTTCCAAGAACTCGGCAACATGGACCAGATGCCCATCCAGCACAAGAT GCCGGTCGAGACCGCTCTGGAGAAGCGTGGCGCGAAGGACGCTCGCATCA GCACAGGAGGTGAGAACCTTGTGGGTACTGTTGCTGCTGCACGATTGTCG TTTTTTTGTGCTCAGAGTCGTTGTTGGCGATGTTGCAGCTGCCCGACCTT GTTCTAGAGCTTTCTGTGCTATGTATCATTTTTTTTTTTTTGTATGGGGC TTCCTATATTAAGGTTACTGAAAGTGGATACCACCGCCTTGTCGCGCGGG TGTTTGACTGTTCAATATCGTATGTATTGAAATCGAAAGTCGCTTTGCTT CTTCTGAACGTACTTCATACTGTTGCTTGATATTCTCAACGACCCTGAAC CTGGTACTGTTGGCACCGTTGAAAGTTTTGTCGCTACATCACGAGGTCTC CAGCACCCGCATCAATAAAAAACCAATCGTGTAAGTTGAGACTCCTTTTC CCGCCATCCTGCCCTCTTATTGTATATTGATCCCCCCGCAGGCAAGGAGA AGGAGCACTTCACGCTTTGTCTGGCTTGTCATGGCAGACGGTAGTCAGGT TCCTCTGCGCATCATCTTTAAGGGCACGCCGTTCATTCCGCCGACCACGC CGGGGAAGGGCAAGCGAGCTCAGCCACGCAAGAACTCCATCGCGACAGAG ATTGCCACTGGGAACTGTACCAAATCCCCCCACATAGTGGGGGGCATGTC GTTTGGCGTGCAGGAGAAGAAGTGTTGCGACCAGCGGGAGTGAACGCTTT GGCTCTCGGAGAGCTGGAGGCTTCACCCCAACAACGAAAGCATCATCAAG CAGAGCCCGAGCATCTTGATGCTGGACGACTTCAAGTGCCACCGAGACGA AGCTTTCATCGCCGACCTCCTGAAGAGGTGCAACACCACCGTCATCCTGA TCCCGGGCGGGTTGACTCCTCTCCTCCAGCCGCTGGAACGCATGCTCAAC AAGCAATGAAGCGGCTGATGCGGAGGAAGGACACCGCCTATACGACCACA GCGGCCATAGACGCTAGAACGGGCAAGCTAAAGCCGCTGGGGCGTGGGAT GGTGTCTACGTGGTGCAAGGATTCGTGGGCAGCCGTCACCCCCGACGTGG TCAAGATTTTCTTCAAGATCTGCGGGCTCACGCTTGCGCTCGACGGCAGC GAGGACGCCGCCTGGTGCGTGCACAACTTCGGTGAAGGTTACTGTCAGCT TCTCCAGCAGCAGCGCGTCGAGTGGGAGGCAGCACACCCCGGTGTCACTC TTCCCCCGCTGCAGCTACCGGAGGTAACCAAGGGCGAGGCGATGAGCACC AACCCCATCGTGACTGCAGAGAAGTAGCTTGAAGGAACGTTGCTACCTCC CAGCGGTGGGGGGGGAAGCGACAGCGATGTGGAGTTGTTGGACGATGGCA TCGATTTAAAGGTGCGGGGCGCGCTGGCGGTCTGGCCCTAACGGCGGGAG AGGAATGGAAGGAGCCGTGAACATCGCTAGTTGAGAATAAGTCAGATCGT AGAATGTCTAGTTATTTTGTGCTGTAAGTTGTACATGTAGCAGCTTGGCT TGGGTGCCATGCAGCGAGCCTAGCTAGTGGTGACCAGTGATGGGGTCGAA TGCGAGTTTGGGTATGGAGAATGCCAAGGACGAAAGACGATGCAGTTCCC CGCTGGGAGTAGATATACGGTATACGGTACGGTATCAGCATTTATTAATT CCAGCATCTTTCTTGGTCGCAAGCCTCTTTGTTGGCTGGTGCGCTTCCCT CTGTTGTTTTCGTCTTCCTCAGCGAGTACGGTAGTAGTAGCACCAAGATG ACTTCCTACTGTAATCGGTCGGTTGTAGGTTGCGGGATGTGTGTTGTGTG CTTGGTTGAGTGCGTACAATGTGGTACCGACTACCGTAAAGAAAACAACT TGAGTCATTTCCCCGTGCGCACCTCGAGGGTGCAATACATGAAAGGAACG GTGCCCACGATTGATACCCTCAAAGCCGTAATAAAAATACCTTCTGCAAT ACCCGTTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig1854:4791..7001+

>mRNA_H-elongata_contig1854.5010.1 ID=mRNA_H-elongata_contig1854.5010.1|Name=mRNA_H-elongata_contig1854.5010.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig1854:4791..7001+ (Himanthalia elongata Himel1 dioecious)
ATGACGTGGGCGACATTGATTAATCTTCGGACGGCTCTCGTGGACCGCTC
TGGCGAAATCTACGCGGGGCGAAACCCGTGTACACCTGATGAGAGCCCTA
TCGACCGGGAGGACCTGATTTCCGAGCAGCTGGAGCCGGTGACCGTCGAG
GTTTTCCAAGAACTCGGCAACATGGACCAGATGCCCATCCAGCACAAGAT
GCCGGTCGAGACCGCTCTGGAGAAGCGTGGCGCGAAGGACGCTCGCATCA
GCACAGGAGATGACGTGGGCGACATTGATTAATCTTCGGACGGCTCTCGT
GGACCGCTCTGGCGAAATCTACGCGGGGCGAAACCCGTGTACACCTGATG
AGAGCCCTATCGACCGGGAGGACCTGATTTCCGAGCAGCTGGAGCCGGTG
ACCGTCGAGGTTTTCCAAGAACTCGGCAACATGGACCAGATGCCCATCCA
GCACAAGATGCCGGTCGAGACCGCTCTGGAGAAGCGTGGCGCGAAGGACG
CTCGCATCAGCACAGGAGGCAAGGAGAAGGAGCACTTCACGCTTTGTCTG
GCTTGTCATGGCAGACGGTAGGCAAGGAGAAGGAGCACTTCACGCTTTGT
CTGGCTTGTCATGGCAGACGGTAG
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