mRNA_H-elongata_contig185355.5008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185355.5008.1
Unique NamemRNA_H-elongata_contig185355.5008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185355.5008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185355contigH-elongata_contig185355:319..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.161757-UTR-H-elongata_contig185355:318..5771622930060.161757-UTR-H-elongata_contig185355:318..577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185355 319..577 +
1691679265.4202774-UTR-H-elongata_contig185355:318..5771691679265.4202774-UTR-H-elongata_contig185355:318..577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185355 319..577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.1833725-CDS-H-elongata_contig185355:577..9161622930060.1833725-CDS-H-elongata_contig185355:577..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185355 578..916 +
1691679265.428132-CDS-H-elongata_contig185355:577..9161691679265.428132-CDS-H-elongata_contig185355:577..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185355 578..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185355.5008.1prot_H-elongata_contig185355.5008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185355 578..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185355.5008.1

>prot_H-elongata_contig185355.5008.1 ID=prot_H-elongata_contig185355.5008.1|Name=mRNA_H-elongata_contig185355.5008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MKIIHNQVYVHFKDGHATLTSSAYFSQRKLCFDSTPRQATIAKHSIIPNA
FRTVALLDEPRAEAWRPRKALIFFCPGIIPIPLRQSAVKHTTPYLAPLYI
LSYQLRYRVHDG*
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mRNA from alignment at H-elongata_contig185355:319..916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185355.5008.1 ID=mRNA_H-elongata_contig185355.5008.1|Name=mRNA_H-elongata_contig185355.5008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=598bp|location=Sequence derived from alignment at H-elongata_contig185355:319..916+ (Himanthalia elongata Himel1 dioecious)
CATGTCGTTAGGAAAAGCACGATCTTTGTGTTAGGGGGGGGAGGGAGGGG
GGGAGCGCTCCATCCAGCCTATTTGTTTTGTACTCCTAACCAGTTGTGGA
GTTTGGTGTGTGACGCGCGGGGCGTTGTTACGTCTCATGTGGGCGGCGTT
CATAGCTGGTGTCTAGCCGACCTTTGCTTGGCGGTGCGTTGCGGTGCGTT
GGAGGGAGGGAAAGAGAAGGAGAGAGTGTTGCAAGCGTAGTCGACAACCA
TGTCTGGTAATGAAAATCATACATAACCAAGTATACGTGCATTTTAAAGA
CGGACATGCGACGCTTACAAGTAGCGCGTACTTCAGCCAGCGTAAGCTGT
GTTTTGATTCTACCCCGCGTCAGGCGACAATTGCGAAGCATTCTATCATA
CCCAACGCCTTTCGCACTGTTGCACTGTTGGATGAACCGCGCGCGGAGGC
CTGGAGGCCCCGGAAAGCTTTGATATTCTTTTGCCCTGGCATTATCCCCA
TCCCCCTTCGGCAGAGCGCTGTAAAACATACCACCCCATACCTAGCCCCC
CTCTATATTTTAAGTTATCAACTACGGTACAGAGTGCATGATGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig185355:319..916+

>mRNA_H-elongata_contig185355.5008.1 ID=mRNA_H-elongata_contig185355.5008.1|Name=mRNA_H-elongata_contig185355.5008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig185355:319..916+ (Himanthalia elongata Himel1 dioecious)
ATGAAAATCATACATAACCAAGTATACGTGCATTTTAAAGACGGACATGC
GACGCTTACAAGTAGCGCGTACTTCAGCCAGCGTAAGCTGTGTTTTGATT
CTACCCCGCGTCAGGCGACAATTGCGAAGCATTCTATCATACCCAACGCC
TTTCGCACTGTTGCACTGTTGGATGAACCGCGCGCGGAGGCCTGGAGGCC
CCGGAAAGCTTTGATATTCTTTTGCCCTGGCATTATCCCCATCCCCCTTC
GGCAGAGCGCTGTAAAACATACCACCCCATACCTAGCCCCCCTCTATATT
TTAAGTTATCAACTACGGTACAGAGTGCATGATGGATGAATGAAAATCAT
ACATAACCAAGTATACGTGCATTTTAAAGACGGACATGCGACGCTTACAA
GTAGCGCGTACTTCAGCCAGCGTAAGCTGTGTTTTGATTCTACCCCGCGT
CAGGCGACAATTGCGAAGCATTCTATCATACCCAACGCCTTTCGCACTGT
TGCACTGTTGGATGAACCGCGCGCGGAGGCCTGGAGGCCCCGGAAAGCTT
TGATATTCTTTTGCCCTGGCATTATCCCCATCCCCCTTCGGCAGAGCGCT
GTAAAACATACCACCCCATACCTAGCCCCCCTCTATATTTTAAGTTATCA
ACTACGGTACAGAGTGCATGATGGATGA
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