mRNA_H-elongata_contig185348.5006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185348.5006.1
Unique NamemRNA_H-elongata_contig185348.5006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 82.8 bits (203), Expect = 6.940e-18
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEET 246
            T+ EA +SSE  +WK A+ REM+   A DV+ LV+ PK K V+G++ +F+RKI  DG +++YK RLVAQ F Q  G+ Y+ET
Sbjct:    8 TINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDET 89          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 82.0 bits (201), Expect = 7.750e-18
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
            T+ EA  S +  +WK+A+  E++     + W +V RP+G+ V+  + VFKRK+  DG++++YK RLVA+G+ QV+GI Y+ET SP     SI
Sbjct:   33 TLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSI 124          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 84.3 bits (207), Expect = 5.070e-17
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
            ++ EAQ + +WP+W+ AI  EMD   A   + LV RP G  V+G+R+VF RK + DG IK+ K R+VAQGF Q+ G+ Y ET +P    +S+
Sbjct:  990 SLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSL 1081          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR)

HSP 1 Score: 82.8 bits (203), Expect = 1.730e-16
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
            T  +A  + E PQWK AI  E+D  +    W+LV  P G   LG R +FKRK+E DG I KYK RLV +GFRQ +G+ Y +T SP    TSI
Sbjct:  273 TYRDAVTTLEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSI 364          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO)

HSP 1 Score: 80.5 bits (197), Expect = 1.120e-15
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    4 MGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
            M  A A  +  +W+ AIA EM   I  D W LV RP+G  ++G+R+V + K + DG +++ K RLVAQGF Q  GIH++ET +P    +SI
Sbjct:  738 MKHAMAGHDAGEWRRAIAAEMKSVIRNDTWTLVDRPRGCKIVGSRIVLRNKFKPDGTLERRKARLVAQGFSQQPGIHFQETFAPVARFSSI 828          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A2B4R5I3_STYPI (Copia protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R5I3_STYPI)

HSP 1 Score: 79.0 bits (193), Expect = 1.340e-15
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
            T+ EA       QWK A+  E    I  D W+LV  P+GK ++G+R V K K    G I ++K RLVAQG+ QVKG+ YEE  SP    TS+
Sbjct:  149 TVHEALNGKHSDQWKEAMKSEYSSLIKNDTWELVPPPEGKNIVGSRWVLKAKRNEAGSIDRFKARLVAQGYSQVKGVDYEEVFSPVACYTSV 240          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI)

HSP 1 Score: 79.7 bits (195), Expect = 2.110e-15
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
            T+ +A    +W +W  A+  E+D  +    W+L + P+G+ V+G+R VFK K+++ G + +YK RLVAQGF Q+ G+ Y+ET SP     SI
Sbjct:  609 TLKDAMRRPDWAKWLEAMREEIDSHMEMGTWELAELPEGRDVVGSRWVFKLKLDSAGNVARYKGRLVAQGFSQIPGVDYDETYSPVTRFISI 700          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 79.0 bits (193), Expect = 3.880e-15
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
            ++ EAQAS +WPQW+ AI  EM+   A   + LV +P G  V+G+++VF RK   +G + + K R+VAQGF Q+ GI + ET +P    +S+
Sbjct:  324 SLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSL 415          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 78.6 bits (192), Expect = 5.380e-15
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSP 255
            T  EA+  S+W +W  A+  +MD  +    W LV+ P G+  +G+R V+K K++ +G+  ++K RLVAQGF QV G+ Y ET +P
Sbjct:  734 TYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAP 818          
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A2I0XEN7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XEN7_9ASPA)

HSP 1 Score: 74.7 bits (182), Expect = 6.220e-15
Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   40 WKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSP 255
            W +A+  E++     DVW+LVKRPK ++V+GT+ VFK K+ + G I + K RLVA+G+ Q++GI +EET +P
Sbjct:   16 WILAMQEELNQFTRNDVWELVKRPKEQSVIGTKWVFKNKVNDSGTIIRNKARLVAKGYNQIEGIDFEETFAP 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7VXK3_AMPQE6.940e-1850.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0015A81C6A7.750e-1842.39uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A1M2V8C6_TRAPU5.070e-1745.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LDN8_9ASTR1.730e-1648.91Integrase catalytic domain-containing protein n=5 ... [more]
A0A8J6HVS3_TENMO1.120e-1543.96Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A2B4R5I3_STYPI1.340e-1544.57Copia protein n=1 Tax=Stylophora pistillata TaxID=... [more]
A0A177U095_9BASI2.110e-1540.22Integrase catalytic domain-containing protein n=2 ... [more]
A0A5K1K0E1_9APHY3.880e-1542.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U1E5_9BASI5.380e-1541.18Integrase catalytic domain-containing protein n=2 ... [more]
A0A2I0XEN7_9ASPA6.220e-1547.22Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185348contigH-elongata_contig185348:173..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.1
Seed ortholog evalue5.9e-13
Seed eggNOG ortholog28532.XP_010520610.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37ZW4@33090,3GNYS@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.855564-CDS-H-elongata_contig185348:172..4451622930059.855564-CDS-H-elongata_contig185348:172..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185348 173..445 -
1691679265.2737062-CDS-H-elongata_contig185348:172..4451691679265.2737062-CDS-H-elongata_contig185348:172..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185348 173..445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.8693798-UTR-H-elongata_contig185348:445..4481622930059.8693798-UTR-H-elongata_contig185348:445..448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185348 446..448 -
1691679265.2846274-UTR-H-elongata_contig185348:445..4481691679265.2846274-UTR-H-elongata_contig185348:445..448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185348 446..448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185348.5006.1prot_H-elongata_contig185348.5006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185348 173..445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185348.5006.1

>prot_H-elongata_contig185348.5006.1 ID=prot_H-elongata_contig185348.5006.1|Name=mRNA_H-elongata_contig185348.5006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKR
KIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI
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mRNA from alignment at H-elongata_contig185348:173..448-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185348.5006.1 ID=mRNA_H-elongata_contig185348.5006.1|Name=mRNA_H-elongata_contig185348.5006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig185348:173..448- (Himanthalia elongata Himel1 dioecious)
ACCATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAATGGC GATCGCACGCGAGATGGATGGGCAAATTGCTCGAGACGTGTGGCAGCTGG TGAAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAG CGAAAAATCGAAAATGATGGAAGGATCAAGAAGTATAAATGTCGTCTCGT GGCACAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAAACCTCCT CTCCGACTCCTGTGCAGACCAGCATT
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Coding sequence (CDS) from alignment at H-elongata_contig185348:173..448-

>mRNA_H-elongata_contig185348.5006.1 ID=mRNA_H-elongata_contig185348.5006.1|Name=mRNA_H-elongata_contig185348.5006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig185348:173..448- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAATGGCGAT
CGCACGCGAGATGGATGGGCAAATTGCTCGAGACGTGTGGCAGCTGGTGA
AGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGA
AAAATCGAAAATGATGGAAGGATCAAGAAGTATAAATGTCGTCTCGTGGC
ACAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAAACCTCCTCTC
CGACTCCTGTGCAGACCAGCATTATGGGCGAGGCGCAAGCGTCGTCGGAG
TGGCCGCAATGGAAAATGGCGATCGCACGCGAGATGGATGGGCAAATTGC
TCGAGACGTGTGGCAGCTGGTGAAGCGCCCAAAAGGGAAGACGGTGTTGG
GCACGAGAGTAGTTTTCAAGCGAAAAATCGAAAATGATGGAAGGATCAAG
AAGTATAAATGTCGTCTCGTGGCACAGGGTTTCAGGCAGGTCAAAGGCAT
ACACTACGAGGAAACCTCCTCTCCGACTCCTGTGCAGACCAGCATT
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