mRNA_H-elongata_contig185348.5006.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 82.8 bits (203), Expect = 6.940e-18 Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEET 246
T+ EA +SSE +WK A+ REM+ A DV+ LV+ PK K V+G++ +F+RKI DG +++YK RLVAQ F Q G+ Y+ET
Sbjct: 8 TINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDET 89
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 82.0 bits (201), Expect = 7.750e-18 Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
T+ EA S + +WK+A+ E++ + W +V RP+G+ V+ + VFKRK+ DG++++YK RLVA+G+ QV+GI Y+ET SP SI
Sbjct: 33 TLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSI 124
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU) HSP 1 Score: 84.3 bits (207), Expect = 5.070e-17 Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
++ EAQ + +WP+W+ AI EMD A + LV RP G V+G+R+VF RK + DG IK+ K R+VAQGF Q+ G+ Y ET +P +S+
Sbjct: 990 SLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSL 1081
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR) HSP 1 Score: 82.8 bits (203), Expect = 1.730e-16 Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
T +A + E PQWK AI E+D + W+LV P G LG R +FKRK+E DG I KYK RLV +GFRQ +G+ Y +T SP TSI
Sbjct: 273 TYRDAVTTLEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMEADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSI 364
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO) HSP 1 Score: 80.5 bits (197), Expect = 1.120e-15 Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 1
Query: 4 MGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
M A A + +W+ AIA EM I D W LV RP+G ++G+R+V + K + DG +++ K RLVAQGF Q GIH++ET +P +SI
Sbjct: 738 MKHAMAGHDAGEWRRAIAAEMKSVIRNDTWTLVDRPRGCKIVGSRIVLRNKFKPDGTLERRKARLVAQGFSQQPGIHFQETFAPVARFSSI 828
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A2B4R5I3_STYPI (Copia protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R5I3_STYPI) HSP 1 Score: 79.0 bits (193), Expect = 1.340e-15 Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
T+ EA QWK A+ E I D W+LV P+GK ++G+R V K K G I ++K RLVAQG+ QVKG+ YEE SP TS+
Sbjct: 149 TVHEALNGKHSDQWKEAMKSEYSSLIKNDTWELVPPPEGKNIVGSRWVLKAKRNEAGSIDRFKARLVAQGYSQVKGVDYEEVFSPVACYTSV 240
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI) HSP 1 Score: 79.7 bits (195), Expect = 2.110e-15 Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
T+ +A +W +W A+ E+D + W+L + P+G+ V+G+R VFK K+++ G + +YK RLVAQGF Q+ G+ Y+ET SP SI
Sbjct: 609 TLKDAMRRPDWAKWLEAMREEIDSHMEMGTWELAELPEGRDVVGSRWVFKLKLDSAGNVARYKGRLVAQGFSQIPGVDYDETYSPVTRFISI 700
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY) HSP 1 Score: 79.0 bits (193), Expect = 3.880e-15 Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSPTPVQTSI 276
++ EAQAS +WPQW+ AI EM+ A + LV +P G V+G+++VF RK +G + + K R+VAQGF Q+ GI + ET +P +S+
Sbjct: 324 SLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSL 415
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI) HSP 1 Score: 78.6 bits (192), Expect = 5.380e-15 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 1 TMGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSP 255
T EA+ S+W +W A+ +MD + W LV+ P G+ +G+R V+K K++ +G+ ++K RLVAQGF QV G+ Y ET +P
Sbjct: 734 TYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAP 818
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Match: A0A2I0XEN7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XEN7_9ASPA) HSP 1 Score: 74.7 bits (182), Expect = 6.220e-15 Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 40 WKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRKIENDGRIKKYKCRLVAQGFRQVKGIHYEETSSP 255
W +A+ E++ DVW+LVKRPK ++V+GT+ VFK K+ + G I + K RLVA+G+ Q++GI +EET +P
Sbjct: 16 WILAMQEELNQFTRNDVWELVKRPKEQSVIGTKWVFKNKVNDSGTIIRNKARLVAKGYNQIEGIDFEETFAP 87 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185348.5006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig185348.5006.1 >prot_H-elongata_contig185348.5006.1 ID=prot_H-elongata_contig185348.5006.1|Name=mRNA_H-elongata_contig185348.5006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp MGEAQASSEWPQWKMAIAREMDGQIARDVWQLVKRPKGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig185348:173..448- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig185348.5006.1 ID=mRNA_H-elongata_contig185348.5006.1|Name=mRNA_H-elongata_contig185348.5006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig185348:173..448- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig185348:173..448- >mRNA_H-elongata_contig185348.5006.1 ID=mRNA_H-elongata_contig185348.5006.1|Name=mRNA_H-elongata_contig185348.5006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig185348:173..448- (Himanthalia elongata Himel1 dioecious)back to top |