mRNA_H-elongata_contig18530.5003.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE) HSP 1 Score: 450 bits (1158), Expect = 1.490e-136 Identity = 305/755 (40.40%), Postives = 402/755 (53.25%), Query Frame = 3
Query: 3 NFTDGDWTAYAVMTQEAVYDVSLEVSTAEAASLKLMI---GND-ANCSDPSALGLAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGTDVDRITFNLADESSGSWATGDECAHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYVGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTGMFNLNYLRFFTPNPTXXXXXXXXXXXXXXXXA-SNEGPAMAWIYVAIFVPLGLLALARLCLIVVRHEXXXXXXXXXXXXXXXXXXAXXXXVNGSRGGRRLLDDNIDTEEGIVTSARSAGTLAANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERAPLRNSSRTIVRRASSEAFTVGGLIDSNRQSFSGTSETRPRSRDDLPSVIDTRFRSAPPVQRFLTASQLEV----------------LVSPVESNLGIGSLDVATAIAS---KAPRACAGEDVMEAGSLWDRSSLISPVRKPIASNMPASVVTPTGWK------------------------RDQFEEALVRALDRQLEGSRLRHVTTASNS---RPNL-------YRSSSFSEGFTTSTASGKNPMLAAGRCWMCRCGFENSVGQGSCLGCGRIAPIGRVSGGVTATPTRTRLPPHRIKS 2093
N TD DW AY VMT++AVYD++L+VST EAA L+L+I G+D C++P L GV V+ATG GSW T V +M+ G Y+LKLCV GG G VD + F+L + S S T ECA +GE RP+M+ +PW IPG+IE EYYD GG GV F++ +P +G STLRLPD V V EA+SNP +GHYVG W GEW+AFT+RA++ +WDVGAS+ASG + T+ FRILVNATNCS TDG +GLG G+DLL GPL TGSWEAF KE+V+VPEG HRVLFCAD G+FN+N+LR +TP PTXXXXXXXXXXXX S++G WIY+ + + LAL+RL I+ E GG+ + + T +G + + + SR + AS A T + + +G+ SRD P+ T +APP+ F +A+ +VSPVES +G+G+ +A K PRA +G+++ +GSLWDR+S +S PI S S TP+ K RDQFE+AL+RALD + E R H S+S P L RS+S +EG + ML A + W C C F+NSVGQ +CLGCGR+AP+ R + TP+R R+PPHR+ S
Sbjct: 335 NLTDTDWLAYTVMTEDAVYDITLQVSTTEAADLELIIRDTGDDNITCANPGEGSLTGVFVVDATGA-GSWGTTVVSEQAMTIGTYSLKLCVRGGAGISVDSVRFDLVEGSEASSLTSAECATSGESRPYMYGDPWVIPGFIEAEYYDYGGNGVSFYKNSPELFYGDSTLRLPDAVGVYEADSNPYNGHYVGYWSTGEWVAFTARADEAAFWDVGASVASGLDGTTVQFRILVNATNCSSAATDGLNGLGDTGVDLLNGPLFAGYTGSWEAFEMVYKEEVYVPEGTHRVLFCADDGIFNMNFLRVWTPTPTXXXXXXXXXXXXAAPVVPSDDGVDTKWIYIGVAGAVVFLALSRLGCIIYGKERSQPPKPDNNGGHAARGG----------GGKGFVYEG--------TPPSDSGAVGGDGAFLSRHGRPSDGEAGNGRHSSAVEPGDPVVVHQHNYRNLFSRGLSSSASFHADTPTEIKTKPNAAVAGSQRASIPSRDASPAAFAT---AAPPLGAFRSATGRSAKSSMTSVGRSVSPPLPVVSPVESAIGVGARVDHSADGPGDFKTPRAKSGQELQRSGSLWDRASTLS----PILSKQGTSTATPSTPKGDSAAALGKDSGGEQLPERRRSEARDQFEDALIRALDNKWESGRRIHGGYGSDSGRASPPLPPVATTPSRSNSINEG--------PSSMLMAVKTWTCVCTFKNSVGQTACLGCGRVAPLNRPT-----TPSRRRIPPHRMNS 1050
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: A0A417YCJ1_9BACI (DUF1080 domain-containing protein n=1 Tax=Oceanobacillus profundus TaxID=372463 RepID=A0A417YCJ1_9BACI) HSP 1 Score: 100 bits (250), Expect = 1.020e-17 Identity = 85/313 (27.16%), Postives = 144/313 (46.01%), Query Frame = 3
Query: 3 NFTDGDWTAYAVMTQEA-VYDVSLEVSTAEAASLKLMIGNDANCSDPSALGLAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGT---------DVDRITFN-LADESSGSWATGDEC--AHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYVGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTGMFNLNYLRF 902
+F +G+W Y Q++ YDVSL V++ + A ++L + ++ + L+GV+ V TG W L + I++ +GN+T+K+ V G V+ + F+ D + W D T P +F+ +PG IE YY+ GG GV +H+TTP N G LR D VD+ + P G VG + GEWL + ++ G +++ ++ +A + R+ ++ ETD L G + + +TG W + KE + +PEG+H + G F+ + F
Sbjct: 543 SFQEGEWLKYNANIQDSGKYDVSLRVASDKNAQVRLRLDDETD--------LSGVVDVPNTGDGNQWENLSIDGITLPEGNHTIKVEVVQGEFDFASMKVSKHKVESVLFDDFNDGNDDGWTPHDGFWKVDTNTDEPSVFDNYKPLPGVIEAAYYNSGGEGVAYHDTTP-ENIG-GVLR-GDSVDI---RNKPQGGTAVGWNQTGEWLKYNVNVKETGLYNLRLDASTTFTDAKV--RLWLD------DETD------------LTGVIDVPSTGGWNNWTPVTKEGITLPEGEHTITVEIVNGEFDFSRFSF 821
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: I0BJY1_9BACL (Glycoside hydrolase n=1 Tax=Paenibacillus mucilaginosus K02 TaxID=997761 RepID=I0BJY1_9BACL) HSP 1 Score: 95.5 bits (236), Expect = 4.470e-16 Identity = 73/261 (27.97%), Postives = 111/261 (42.53%), Query Frame = 3
Query: 153 LAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGTDVDRITFNLA-----------DESSGSWATGDECAHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYVGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTGMFNLNYLRF 902
LA ++V TG W+ L V + + +G +TL + GG D+ +TF+ A D W D G +N +PG +E YY+ GG G+G+HET+P N G LR D ++ +N +GH VG + GEWL + ++ G + N + +NAT L DG D L G + L +G W +V KE V++P+G H + G ++ L F
Sbjct: 595 LADQVSVPVTGQDAPWSNLLVKGLQLPEGEHTLTVEALGG-SFDLSSMTFHTAADTEAFSDDFNDGRDDGWTKYDLNWKVDTGETVTYNAYKPLPGIVEAPYYNDGGEGIGYHETSP-ENIG-GALR----GDAVDVRTNSFNGHNVGWNQTGEWLKYNVEVKEAGLY-----------NFELTTATTMNATQARLWLEDGTD---------LTGVMDLPTSGDWNRWVTAKKEGVYLPQGKHTLKLETVHGEYDFARLAF 828
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: A0A7M2X2X7_9BACT (Carbohydrate-binding protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7M2X2X7_9BACT) HSP 1 Score: 88.6 bits (218), Expect = 5.780e-14 Identity = 80/308 (25.97%), Postives = 128/308 (41.56%), Query Frame = 3
Query: 15 GDWTAYAVMTQEA-VYDVSLEVSTAEAASLKLMIGNDANCSDPSALGLAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGTDVDRITF-NLADESSGSWATGDECAHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYVGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTG----MFNLNYLRFFTPNPT 920
G+W Y V A YD+ + +TA G + L G + + TGG+ +W T+ +++S G + L+ G D+ + + +L D + G+ PWA+PG I+ E +D GGAG+ + ++ P +N G S GVD IE + G +G+ AGEWL +T G +++G AS N + E DG GG L+L +TG W+ + + +P G H + F D+ + NLN+ + T PT
Sbjct: 399 GEWLEYTVNIAAAGQYDLGVRFATAG--------GGGTAHLEVDGLAAGGAIVLPNTGGWQTWQTVAGPRLTLSAGQHVLRFAFDASAGGDIGNLNWLSLTDAPTVPXXXXXXXI----GQTPFGGTPWALPGTIQFENFDEGGAGISYQDSDP-TNVGGSYRST--GVD-IEPSGDTDSGFALGHVTAGEWLEYTVNIASAGQYNLGVRFASS------------NLGGSAHLEVDGVQ---------TGGSLALTSTGGWQTWQTFALNGLTLPAGQHVLRFSLDSSAGGDIGNLNWFQL-TAVPT 668
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: A0A5R9G639_9BACL (Carbohydrate-binding protein n=1 Tax=Paenibacillus antri TaxID=2582848 RepID=A0A5R9G639_9BACL) HSP 1 Score: 87.8 bits (216), Expect = 1.020e-13 Identity = 77/304 (25.33%), Postives = 127/304 (41.78%), Query Frame = 3
Query: 30 YAVMTQEA-VYDVSLEVSTAEAASLKLMIGNDANCSDPSALGLAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGTDVDRITFNLA-----------DESSGSWATGDECAHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSH-GHYVGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTGMFNLNYLRF 902
Y + EA YDV + + A +KL + +D + + +TGG W+ + ++ + +G +TLK+ G + +TFN D W ++ G F+ +PG +E +Y+ GG GVG+H+TTP N G + D VD+ +N ++ G VG AGEWL + ++ G + V + + A R+ +N T TD L G + + ATG W A+ L ++PEG H + F G ++ L+F
Sbjct: 548 YRINVSEAGTYDVMIRYAADADARVKLELDESTALTDE--------VRLPSTGGAEKWSNALIRNVELPQGLHTLKVVPVGDASFEFSSMTFNRTVPTTPIFDDFNDGDDQGWRKFEQGWRVNTGEEPAFDAYKPVPGIVEAPFYNTGGEGVGYHDTTP-ENIGGAYRG--DSVDI---RTNTNYNGLNVGWNRAGEWLKYNVEVKRAGTYRV--EVTAATTFADNEARLWLNDT------TD------------LTGAIDIKATGDWNAWKTTLSPSFYLPEGRHTITFETVKGEYDFARLKF 817
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: UPI00178C79D5 (DUF5010 C-terminal domain-containing protein n=1 Tax=Halorubrum sp. T3 TaxID=1194088 RepID=UPI00178C79D5) HSP 1 Score: 85.1 bits (209), Expect = 2.950e-13 Identity = 80/297 (26.94%), Postives = 127/297 (42.76%), Query Frame = 3
Query: 15 GDWTAYAVMTQEAVYDVSLEVSTAEAASLKLMIGNDANCSDPSALGLAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGTDVDRITFNLADESSGSWATGDECAHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYVGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFC-ADTGMFNLNYLRF 902
G+WT Y V + YD+ L V++ K+ + D G + + TGG+ +W T+ V I + + + ++ G +++ I FN A GS + E + G + W IPG I+VE YD GGAGV + +TT + G+ DG IEA S+ GH + + GEW +T G Y + +AS N I R+L++ + G + + TG W+ + ++ GD RVL A G +NLN++ F
Sbjct: 240 GEWTEYTVGSDAGTYDIDLRVASNRGEG-KIRVSLDGTA--------LGTVDIPQTGGWQNWQTVTVPDIELDETDGSVLRIEAVEGGYNLNWIEFNQA----GSIESPPEQSPYG-------SSAWEIPGMIQVEDYDTGGAGVAYSDTTDQNMGGYR-----DGAVDIEATSDDGGGHNIAWTDTGEWTEYTVDTITGTY-EARLRVASNRGNGRI--RLLLDGE--------------------VVGTVDIPKTGGWQNWQTVTIPELSFDAGDGRVLRVEALEGGYNLNWIEF 488
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: UPI00117DBE3E (carbohydrate-binding protein n=1 Tax=Catenovulum sediminis TaxID=1740262 RepID=UPI00117DBE3E) HSP 1 Score: 84.7 bits (208), Expect = 5.330e-13 Identity = 75/297 (25.25%), Postives = 128/297 (43.10%), Query Frame = 3
Query: 6 FTDGDWTAYAVMTQEAV-YDVSLEVSTA-EAASLKLMIGNDANCSDPSALGLAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGTDVDRITFNLADESSGSWATGDECAHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYVGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTGMFNLN 890
F G+W Y V + A Y + +V++ SL+ + N + + ++ TG + +W + S+S++ G + +++ G G +VD I+F L + G P+ P +PG IE E+YD+GGAG+ +++ + G LR D VD+ A + G+ +G +E GEWL +T Q G +D+ A +ASG + F AT D+ + ++ TG W+ + V + G H V +G FN+N
Sbjct: 91 FEPGEWLEYTVNVETAGNYAIHAKVASGMNGGSLRFEVYGATNTNSET-------ISFPGTGSWQNWTSSPSTSLSLNAGTHIVRVVQNSG-GFNVDSISFALTNSG---------------GTPYH-GAPAQVPGVIEAEFYDIGGAGIAYNDLNAGNTGGQ--LRNED-VDIELASTG---GYNIGWFEPGEWLTYTINVSQAGNYDISAIVASGMGGGAMRFEF-TGAT------------------DVQSADIQISDTGGWQNWTPSPNTSVTLNAGMHVVRLLQLSGGFNVN 338
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: UPI0015EF858A (glycosyl hydrolase n=1 Tax=Halorhabdus sp. FL145 TaxID=2750670 RepID=UPI0015EF858A) HSP 1 Score: 83.6 bits (205), Expect = 1.990e-12 Identity = 69/222 (31.08%), Postives = 96/222 (43.24%), Query Frame = 3
Query: 243 YTLKLCVTGGVGTDVDRITFNLADESSGSWATGDECAHTGEGRPFMFNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHY-VGNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPL-KEDVWVPEGDHRVLFCADTGMFNLNYLRF 902
YTL + G G + R T + + G+ +PF E IPG IE EY+D GG GV +HET+ + G P VD+ EA S G+Y +G GEWL ++ E +D+ S+AS E + E DG D + G + + TGSW + E V + EGDH V AD G +N +Y+RF
Sbjct: 993 YTLGVVAVDGAGNESRRATIDATTIAEGAVQ-----------KPFQ-GERRQIPGQIEAEYFDEGGEGVSYHETSENNQAGADYRDHP--VDIGEA----SGGNYTIGYIPGGEWLEYSVTVESTAEYDIIVSVASAEGGGPVHI------------EVDGED---------VTGSIDVPNTGSWTGYTEVTGAEGVELEEGDHIVRVVADGGAWNFDYMRF 1175
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: A0A7Y0K692_9BACI (Carbohydrate-binding protein n=4 Tax=Bacillaceae TaxID=186817 RepID=A0A7Y0K692_9BACI) HSP 1 Score: 78.6 bits (192), Expect = 6.950e-11 Identity = 75/314 (23.89%), Postives = 128/314 (40.76%), Query Frame = 3
Query: 15 GDWTAYAV-MTQEAVYDVSLEVS-TAEAASLKLMIGNDANCSDPSALGLAGVLAVEATGGFGSWNTLYVGSISMSKGNYTLKLCVTGGVGT----------DVDRITFNLADESSGSWATGDECAHTGEGRPFM-----FNEPWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYVGNW-EAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTGMFNLNYLRF 902
G+W Y V + +E +Y++ L V +++ A +++++ + + G +++ + W T + + + KG +TL + V G VD ++ + D + W DE T + PF F+E +PG I YY+ GG GV +H+TT N G R D VD+ +NP G Y W + GEWL + ++ +GE N + L D D L G + +TG W + +K + +PEG+H + G F+ + F
Sbjct: 522 GEWLKYNVNIAKEGLYNLDLRVGESSKDAKVRILLDGKTD--------ITGDVSIPQSN---DWRTFSIEKLKLPKGKHTLTIEVKKGSFDFASFKVQGYKAVDSLSDDFNDGDADGW---DEVEGTWKVGPFEEVNIDFDEYKQVPGVINAAYYNTGGEGVAYHDTT-TENIGGVFRR--DSVDI---RTNPEGGGYAVGWNQTGEWLKYNVNVQE-----------AGEYNLKLYMATTFTTAKARLWLDDEID---------LTGVFDVPSTGGWNNWTPVIKNGITLPEGNHTLKLEFVEGEFDFTKMEF 795
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Match: A0A537LUF1_9BACT (Carbohydrate-binding protein n=2 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537LUF1_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 1.000e-10 Identity = 52/171 (30.41%), Postives = 81/171 (47.37%), Query Frame = 3
Query: 390 PWAIPGYIEVEYYDLGGAGVGFHETTPLSNFGHSTLRLPDGVDVIEAESNPSHGHYV-GNWEAGEWLAFTSRAEQGGYWDVGASIASGEENATIVFRILVNATNCSLPETDGFDGLGIEGIDLLGGPLSLAATGSWEAFVFPLKEDVWVPEGDHRVLFCADTGMFNLNYLR 899
PWAIPG ++ E +D+GG GV +H+TTP + G R+ VD+I +G YV N++ GEWL +T G + + ++S + + FR+ ++ N + G LS+ TGSW F + V + G H + AD FNL+ +R
Sbjct: 746 PWAIPGVVQAENFDVGGEGVAYHDTTPGNQGGQ--YRMDVDVDIIA-----DNGRYVINNFQTGEWLEYTINVTATGVYRIEVLVSS--QFSASRFRMALDGQNVT-------------------GSLSVPNTGSWHTFQWVGASGVGLTMGLHVLRVYADQQYFNLDAIR 888 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18530.5003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18530.5003.1 >prot_H-elongata_contig18530.5003.1 ID=prot_H-elongata_contig18530.5003.1|Name=mRNA_H-elongata_contig18530.5003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=690bp MTQEAVYDVSLEVSTAEAASLKLMIGNDANCSDPSALGLAGVLAVEATGGback to top mRNA from alignment at H-elongata_contig18530:385..6071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18530.5003.1 ID=mRNA_H-elongata_contig18530.5003.1|Name=mRNA_H-elongata_contig18530.5003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5687bp|location=Sequence derived from alignment at H-elongata_contig18530:385..6071- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18530:385..6071- >mRNA_H-elongata_contig18530.5003.1 ID=mRNA_H-elongata_contig18530.5003.1|Name=mRNA_H-elongata_contig18530.5003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4140bp|location=Sequence derived from alignment at H-elongata_contig18530:385..6071- (Himanthalia elongata Himel1 dioecious)back to top |