mRNA_H-elongata_contig1852.5001.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1852.5001.1
Unique NamemRNA_H-elongata_contig1852.5001.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1852.5001.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 6.730e-62
Identity = 119/273 (43.59%), Postives = 169/273 (61.90%), Query Frame = 1 
Query:    7 KTNIEYKLRLSVMVGLEGAGHHYLLSSYKNMFKENDTISVDATDCIGMTPYLTERSMVKSPSSYSHDLEQATTEMRRLAEQGKNISGPGHIAALCHFISYPTNFGPQKVMQYLDLGLLAEVAETEGVDLRTIYLRRSAQEIVIADTVHRNFQNQEKRKRDMELPIKPAEQLFVEYMRILLTDIAVVQSMLAELDPAFIVCHDYALAGDKEEASKIAHFVAPNDIVAAMYDSALTKTWK--SHFEPGKAIPIANADVIVARLQRKLDSFEYIYC 819
            KT++    RL  + GLEG GHHY++ +  ++F +N  +         +  Y     M ++   ++     A   MRRLAE   N+S PG +       SYP N GP KVMQY+DLG++AE AE  G+D R +YLRRSA+E+VIA+TVHR F        D E  +   E+LF++YMR+L TDIAV+ S L E+ P F+VCHD+   GDKE+AS IA F++PND +A++ +S+L +T K  S  +P   +P  +A  +V RLQRKLD+FE++YC
Sbjct:  141 KTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGDNMNLPRRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMRRLAEWAANLSSPGALEFFSIPCSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKFHLL---MGDDEETVGQ-ERLFLKYMRVLFTDIAVLHSFLGEIGPEFVVCHDWDRLGDKEQASTIASFISPNDEIASLVESSLVQTAKKSSRTDP---LPFEDAYAVVLRLQRKLDAFEHLYC 406
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BLAST of mRNA_H-elongata_contig1852.5001.1 vs. uniprot
Match: D7FZI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI1_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.460e-31
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:  511 EQLFVEYMRILLTDIAVVQSMLAELDPAFIVCHDYALAGDKEEASKIAHFVAPNDIVAAMYDSALTKTWKSHFEPGKAIPIANADVIVARLQRKLDSFEYIYC 819
            E+LF+EYMR+L TDIAV+QS L+E+ P FIVCHD+   GDKE+AS IAHF+APND +A + +S+L +T +        +P  +AD +V+RLQRKLD+FE +YC
Sbjct:   11 ERLFLEYMRVLFTDIAVLQSFLSEIGPEFIVCHDWDRLGDKEQASTIAHFIAPNDEIAGLVESSLVQTARKKSSNTNPLPFEDADAVVSRLQRKLDAFEPLYC 113
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BLAST of mRNA_H-elongata_contig1852.5001.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 7.630e-26
Identity = 77/237 (32.49%), Postives = 119/237 (50.21%), Query Frame = 1 
Query:    1 VRKTNIEYKLRLSVMVGLEGAGHHYLLSSYKNMFKENDTISVDATDCIGMTPYLTERSMVKSPSSYSHDLEQATTEMRRLAEQGKNISGPGHIAAL----CHF-----ISYPTNFGPQKVMQYLDLGLLAEVAETEGVDLRTIYLRRSAQEIVIADTVHRNFQNQEKRKRDMELPIKPAEQLFVEYMRILLTDIAVVQSMLAELDPAFIVCHDYALAGDKEEASKIAHFVAPNDIVA 684
            V K  +  ++R+  +VGLEG GHHY+    +++ K+ D +      C+       E S+ KS ++Y    ++   EM +LA   +     G    +    C F     +SYP   G +K +QY+D  L+AE AE  GVD+R +YL RSA +I+ +D+ H N+                    F+   RILL ++AVV S   ELDP+F  C  Y    D  +A+++A F+APN+  A
Sbjct:   99 VEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKK-DKVRCPKL-CVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGS-----------------FIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPNNHTA 316
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BLAST of mRNA_H-elongata_contig1852.5001.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.510e-25
Identity = 84/263 (31.94%), Postives = 120/263 (45.63%), Query Frame = 1 
Query:    1 VRKTNIEYKLRLSVMVGLEGAGHHYLLSSYKNMFKENDTISVDATDCIGMTPYLTERSMVKSPSSYSHDLEQATTEMRR----LAEQGKNISGPGHIAALCHFI---------SYPTNFGPQKVMQYLDLGLLAEVAETEGVDLRTIYLRRSAQEIVIADTVHRNFQNQEKRKRDMELPIKPAEQLFVEYMRILLTDIAVVQSMLAELDPAFIVCHDYALAGDKEEASKIAHFVAPNDIVAAMYDSALTKTWKSHFEPGKAIP 750
            V K  +  +LR+  +VGLEG GHHY L    N+F  +D  +  A  C    P         +  S   D E+A  E+RR    LA         G  AA+  F+         S+P   G  K +QY+D  LLAE AE  GVD+R +YL RSA+ I+++DT H ++                    F+   R L+ + AVV+S   EL P F  C  Y    D E+  ++A F+AP++  A   +  + +  K    PG A P
Sbjct:   58 VEKKTVSSQLRVMFLVGLEGTGHHYFL----NVF--DDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQ-AAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGG-----------------TFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPDEDTAQRLEGKMLENVK----PGSASP 292
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BLAST of mRNA_H-elongata_contig1852.5001.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.350e-22
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:  175 MVKSPSSYSHDLEQATTEMRRLAEQGKNISGPGHIAALCHFISYPTNFGPQKVMQYLDLGLLAEVAETEGVDLRTIYLRRSAQEIVIADTVHRNFQN 465
            M  S ++++   +Q   +MR LA++ + +  PG +  +   ISYP   GPQKV QY+DL LLAE AE EGVDLR +Y++RSA+E+++ADTVHR FQN
Sbjct:   27 MRTSSTAFTASWQQGRDQMRDLAQRAQTLPTPGTVQLITGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGFQN 123
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BLAST of mRNA_H-elongata_contig1852.5001.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.570e-20
Identity = 78/258 (30.23%), Postives = 118/258 (45.74%), Query Frame = 1 
Query:  139 CIGMTPYLTERSMVKSPSSYSHDLEQATTEMRRLAEQGKNISGPGHIAAL----CHF-----ISYPTNFGPQKVMQYLDLGLLAEVAETEGVDLRTIYLRRSAQEIVIADTVHRNFQNQEKRKRDMELPIKPAEQLFVEYMRILLTDIAVVQSMLAELDPAFIVCHDYALAGDKEEASKIAHFVAPNDIVAAMY--------------DSALTKTW----KSHFEPGKAIPIANADVIVARLQRKLDSFEYIYCPSRS 831
            C+       E S+ +S ++Y    ++   EM +LA   +     G    +    C F     +SYP   G +K +QY+D  L+AE AE  GVD+R +YL RSA +I+ +D+VH N+                    F+   RILL ++AVV S   ELDPAF  C  Y    D  +A+++A F+APN+  A                 +S   ++W    K    P    P   A  +V RLQ++LD  E   C +++
Sbjct:   20 CVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGS-----------------FIRESRILLNNLAVVHSTFQELDPAFTTCFRYGEMADPAQAARVAGFLAPNNRTAEKLADQMLSHVKIKSPPESGNKQSWGEGGKRLRHPEDVDPPKAA--VVTRLQQRLDMVEKDVCSTKN 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1852.5001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JH94_9PHAE6.730e-6243.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI1_ECTSI8.460e-3155.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV4_ECTSI7.630e-2632.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV3_ECTSI3.510e-2531.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1E6_ECTSI2.350e-2249.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA1_9PHAE1.570e-2030.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1852contigH-elongata_contig1852:10565..11852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size834
Cds size834
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.236781-CDS-H-elongata_contig1852:10564..109221622930059.236781-CDS-H-elongata_contig1852:10564..10922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1852 10565..10922 -
1691679264.944624-CDS-H-elongata_contig1852:10564..109221691679264.944624-CDS-H-elongata_contig1852:10564..10922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1852 10565..10922 -
1622930059.249046-CDS-H-elongata_contig1852:11376..118521622930059.249046-CDS-H-elongata_contig1852:11376..11852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1852 11377..11852 -
1691679264.9560664-CDS-H-elongata_contig1852:11376..118521691679264.9560664-CDS-H-elongata_contig1852:11376..11852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1852 11377..11852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1852.5001.1prot_H-elongata_contig1852.5001.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1852 10565..11852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1852.5001.1

>prot_H-elongata_contig1852.5001.1 ID=prot_H-elongata_contig1852.5001.1|Name=mRNA_H-elongata_contig1852.5001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp
VRKTNIEYKLRLSVMVGLEGAGHHYLLSSYKNMFKENDTISVDATDCIGM
TPYLTERSMVKSPSSYSHDLEQATTEMRRLAEQGKNISGPGHIAALCHFI
SYPTNFGPQKVMQYLDLGLLAEVAETEGVDLRTIYLRRSAQEIVIADTVH
RNFQNQEKRKRDMELPIKPAEQLFVEYMRILLTDIAVVQSMLAELDPAFI
VCHDYALAGDKEEASKIAHFVAPNDIVAAMYDSALTKTWKSHFEPGKAIP
IANADVIVARLQRKLDSFEYIYCPSRS*
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mRNA from alignment at H-elongata_contig1852:10565..11852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1852.5001.1 ID=mRNA_H-elongata_contig1852.5001.1|Name=mRNA_H-elongata_contig1852.5001.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1288bp|location=Sequence derived from alignment at H-elongata_contig1852:10565..11852- (Himanthalia elongata Himel1 dioecious)
GTGAGAAAGACGAACATCGAGTACAAGCTTCGTCTGAGTGTCATGGTGGG
GCTTGAGGGTGCAGGTCACCACTACCTGCTCTCGTCATACAAGAACATGT
TCAAGGAAAACGACACCATCTCGGTTGATGCTACAGACTGCATTGGAATG
ACACCGTATTTGACTGAGCGTTCGATGGTGAAGTCCCCGTCATCTTATAG
CCATGACCTTGAACAGGCTACCACAGAAATGCGGCGGCTAGCTGAACAAG
GGAAAAACATCTCGGGGCCAGGACATATTGCCGCACTTTGCCACTTTATA
TCGTATCCCACGAACTTCGGACCCCAAAAGGTTATGCAATACCTCGACCT
CGGGCTGTTGGCAGAGGTGGCGGAGACTGAAGGAGTTGATCTACGAACGA
TTTATTTGAGGCGCTCGGCGCAAGAAATCGTCATTGCAGACACTGTTCAT
CGAAATTTTCAAAACCAAGAGAAGAGGTAGGCCTGGCGAAATATAAGCGA
TGGCTAGATGAGTTTGGGTATTGAGTAAAATGCCGTCGATACCATAAATA
ATATTGCTATGGGATGGCTATAACGTTAGATCGAGATCACAGAAGAATCG
TATCATCTGTGAAAGGTCCGTTCACTTCAGACCGCTGAATTATTATACAG
TATATATTATAGGAGTAGCAACAACGTCAAATCGAAGATATTAATTTGTG
ATGTTCATAGGACCGAGCATATATTATATAGAGAGCTCTAATAACCCAAA
CAAACTCCTCAATGATTGTAGTGAGACGCTTACAGACACGTGAATCGGTA
TCTTCGCTGCTCGACGGGAATTATTCGTTTCTTCCGTATTTCGTATGACT
GTCAATATAAGCCATCTGGTCCTCCTTTAGTTTAATCCCATAACCAACCG
TATCCCACACCATGGACTTCGTTTCGCCAGGAAGCGTGACATGGAACTCC
CTATAAAGCCAGCAGAGCAGCTTTTTGTGGAGTATATGCGAATCTTACTG
ACGGACATTGCGGTGGTGCAGTCTATGCTTGCAGAGCTCGATCCTGCATT
TATTGTGTGCCACGATTATGCTCTCGCGGGAGACAAAGAGGAGGCATCAA
AGATCGCTCACTTCGTCGCTCCAAACGACATAGTCGCAGCAATGTACGAC
TCCGCTTTGACGAAGACATGGAAAAGTCATTTTGAGCCTGGAAAAGCTAT
ACCGATTGCGAACGCCGACGTTATTGTAGCACGTCTACAGCGGAAGCTCG
ACAGCTTTGAATATATATATTGTCCGAGTCGGTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1852:10565..11852-

>mRNA_H-elongata_contig1852.5001.1 ID=mRNA_H-elongata_contig1852.5001.1|Name=mRNA_H-elongata_contig1852.5001.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig1852:10565..11852- (Himanthalia elongata Himel1 dioecious)
GTGAGAAAGACGAACATCGAGTACAAGCTTCGTCTGAGTGTCATGGTGGG
GCTTGAGGGTGCAGGTCACCACTACCTGCTCTCGTCATACAAGAACATGT
TCAAGGAAAACGACACCATCTCGGTTGATGCTACAGACTGCATTGGAATG
ACACCGTATTTGACTGAGCGTTCGATGGTGAAGTCCCCGTCATCTTATAG
CCATGACCTTGAACAGGCTACCACAGAAATGCGGCGGCTAGCTGAACAAG
GGAAAAACATCTCGGGGCCAGGACATATTGCCGCACTTTGCCACTTTATA
TCGTATCCCACGAACTTCGGACCCCAAAAGGTTATGCAATACCTCGACCT
CGGGCTGTTGGCAGAGGTGGCGGAGACTGAAGGAGTTGATCTACGAACGA
TTTATTTGAGGCGCTCGGCGCAAGAAATCGTCATTGCAGACACTGTTCAT
CGAAATTTTCAAAACCAAGAGAAGAGGTGAGAAAGACGAACATCGAGTAC
AAGCTTCGTCTGAGTGTCATGGTGGGGCTTGAGGGTGCAGGTCACCACTA
CCTGCTCTCGTCATACAAGAACATGTTCAAGGAAAACGACACCATCTCGG
TTGATGCTACAGACTGCATTGGAATGACACCGTATTTGACTGAGCGTTCG
ATGGTGAAGTCCCCGTCATCTTATAGCCATGACCTTGAACAGGCTACCAC
AGAAATGCGGCGGCTAGCTGAACAAGGGAAAAACATCTCGGGGCCAGGAC
ATATTGCCGCACTTTGCCACTTTATATCGTATCCCACGAACTTCGGACCC
CAAAAGGTTATGCAATACCTCGACCTCGGGCTGTTGGCAGAGGTGGCGGA
GACTGAAGGAGTTGATCTACGAACGATTTATTTGAGGCGCTCGGCGCAAG
AAATCGTCATTGCAGACACTGTTCATCGAAATTTTCAAAACCAAGAGAAG
AGGAAGCGTGACATGGAACTCCCTATAAAGCCAGCAGAGCAGCTTTTTGT
GGAGTATATGCGAATCTTACTGACGGACATTGCGGTGGTGCAGTCTATGC
TTGCAGAGCTCGATCCTGCATTTATTGTGTGCCACGATTATGCTCTCGCG
GGAGACAAAGAGGAGGCATCAAAGATCGCTCACTTCGTCGCTCCAAACGA
CATAGTCGCAGCAATGTACGACTCCGCTTTGACGAAGACATGGAAAAGTC
ATTTTGAGCCTGGAAAAGCTATACCGATTGCGAACGCCGACGTTATTGTA
GCACGTCTACAGCGGAAGCTCGACAGCTTTGAATATATATATTGTCCGAG
TCGGTCGTGAGAAGCGTGACATGGAACTCCCTATAAAGCCAGCAGAGCAG
CTTTTTGTGGAGTATATGCGAATCTTACTGACGGACATTGCGGTGGTGCA
GTCTATGCTTGCAGAGCTCGATCCTGCATTTATTGTGTGCCACGATTATG
CTCTCGCGGGAGACAAAGAGGAGGCATCAAAGATCGCTCACTTCGTCGCT
CCAAACGACATAGTCGCAGCAATGTACGACTCCGCTTTGACGAAGACATG
GAAAAGTCATTTTGAGCCTGGAAAAGCTATACCGATTGCGAACGCCGACG
TTATTGTAGCACGTCTACAGCGGAAGCTCGACAGCTTTGAATATATATAT
TGTCCGAGTCGGTCGTGA
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