prot_H-elongata_contig996.17288.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig996.17288.1
Unique Nameprot_H-elongata_contig996.17288.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length219
Homology
BLAST of mRNA_H-elongata_contig996.17288.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.390e-20
Identity = 82/197 (41.62%), Postives = 105/197 (53.30%), Query Frame = 0
Query:   11 VYSPRSAANGVVGGLHWSTRLSPRLPNGVINASPAAPSINDGDHQGVGGTE---YRSPKK-RRRSTRPSIAPVDMMTFPATPPVLNNRSRAASSKGKRRASLGA-RDSAGHYRGXXXXXXAGINDEEDVML-ESRVGAGFDHGKMSDAAFDRMLEEMEADRDNDRGXXXXXXXXXXXXXXPP-GYFDSFQTCEWRLR 200
             +   S     V G   S    P  P G    SP A     G   G    +   YRSPKK RRRS+RPS+ PV+++  PA+   L       SS+GKR+AS+G  R+S G    XXXXXX    DE+  M  ++ + +G DH KMSDA FDRML +MEADR ++R XX            PP GYFD++  CEWR+R
Sbjct: 3129 TFDDPSPPGSSVHGRRGSGSGLPPQPGG--EPSPTAVEAAAGGSSGAPPADADSYRSPKKQRRRSSRPSVPPVELVVSPASMSPLR------SSRGKRKASMGGGRESFGVXXXXXXXXXXXDGDEDTAMPGDASMKSGLDHSKMSDAEFDRMLADMEADRGSERXXXSGGKAAAQPHSFPPQGYFDTYPKCEWRVR 3317          
BLAST of mRNA_H-elongata_contig996.17288.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 8.230e-5
Identity = 52/128 (40.62%), Postives = 66/128 (51.56%), Query Frame = 0
Query:   28 STRLSPRLPNGVINASPAAPSINDGDHQGVGGTEYRSPKK-RRRSTRPSIAPVDMMTFPATPPVLNNRSRAASSKGKRRASLGA-RDSAGHYRGXXXXXXAGINDEE-----DVMLESRVGAGFDHGK 148
            S   SP         S  AP   D D       EYRSPKK RRRS+RPS+ PV+++  PA+   L       SS+GKR+AS+G  R+S G   G XXXXX    DE+     D  ++SR G   D G+
Sbjct: 2341 SAEPSPTAAEAAAGGSSGAPPA-DAD-----SAEYRSPKKQRRRSSRPSVPPVELVVSPASMSPLR------SSRGKRKASMGGGRESFGVGTGGXXXXXXXDGDEDAVVPGDASMKSRAGPQQDVGR 2456          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig996.17288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKE0_9PHAE4.390e-2041.62PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FZH6_ECTSI8.230e-540.63WD repeat domain-containing protein, putative n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig996contigH-elongata_contig996:14114..14770 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig996.17288.1mRNA_H-elongata_contig996.17288.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig996 14114..14772 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig996.17288.1 ID=prot_H-elongata_contig996.17288.1|Name=mRNA_H-elongata_contig996.17288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
VEPETERREGVYSPRSAANGVVGGLHWSTRLSPRLPNGVINASPAAPSIN
DGDHQGVGGTEYRSPKKRRRSTRPSIAPVDMMTFPATPPVLNNRSRAASS
KGKRRASLGARDSAGHYRGGGGGGGAGINDEEDVMLESRVGAGFDHGKMS
DAAFDRMLEEMEADRDNDRGGGGGGKSAADASSPPPGYFDSFQTCEWRLR
PPGAGMGTANATRGPPHLS
back to top