mRNA_H-elongata_contig996.17288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig996.17288.1
Unique NamemRNA_H-elongata_contig996.17288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig996.17288.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.390e-20
Identity = 82/197 (41.62%), Postives = 105/197 (53.30%), Query Frame = 1 
Query:   31 VYSPRSAANGVVGGLHWSTRLSPRLPNGVINASPAAPSINDGDHQGVGGTE---YRSPKK-RRRSTRPSIAPVDMMTFPATPPVLNNRSRAASSKGKRRASLGA-RDSAGHYRGXXXXXXAGINDEEDVML-ESRVGAGFDHGKMSDAAFDRMLEEMEADRDNDRGXXXXXXXXXXXXXXPP-GYFDSFQTCEWRLR 600
             +   S     V G   S    P  P G    SP A     G   G    +   YRSPKK RRRS+RPS+ PV+++  PA+   L       SS+GKR+AS+G  R+S G    XXXXXX    DE+  M  ++ + +G DH KMSDA FDRML +MEADR ++R XX            PP GYFD++  CEWR+R
Sbjct: 3129 TFDDPSPPGSSVHGRRGSGSGLPPQPGG--EPSPTAVEAAAGGSSGAPPADADSYRSPKKQRRRSSRPSVPPVELVVSPASMSPLR------SSRGKRKASMGGGRESFGVXXXXXXXXXXXDGDEDTAMPGDASMKSGLDHSKMSDAEFDRMLADMEADRGSERXXXSGGKAAAQPHSFPPQGYFDTYPKCEWRVR 3317
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BLAST of mRNA_H-elongata_contig996.17288.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 8.230e-5
Identity = 52/128 (40.62%), Postives = 66/128 (51.56%), Query Frame = 1 
Query:   82 STRLSPRLPNGVINASPAAPSINDGDHQGVGGTEYRSPKK-RRRSTRPSIAPVDMMTFPATPPVLNNRSRAASSKGKRRASLGA-RDSAGHYRGXXXXXXAGINDEE-----DVMLESRVGAGFDHGK 444
            S   SP         S  AP   D D       EYRSPKK RRRS+RPS+ PV+++  PA+   L       SS+GKR+AS+G  R+S G   G XXXXX    DE+     D  ++SR G   D G+
Sbjct: 2341 SAEPSPTAAEAAAGGSSGAPPA-DAD-----SAEYRSPKKQRRRSSRPSVPPVELVVSPASMSPLR------SSRGKRKASMGGGRESFGVGTGGXXXXXXXDGDEDAVVPGDASMKSRAGPQQDVGR 2456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig996.17288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKE0_9PHAE4.390e-2041.62PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FZH6_ECTSI8.230e-540.63WD repeat domain-containing protein, putative n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig996contigH-elongata_contig996:14114..14772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size661
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931384.917362-CDS-H-elongata_contig996:14113..147701622931384.917362-CDS-H-elongata_contig996:14113..14770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig996 14114..14770 +
1691679814.6481473-CDS-H-elongata_contig996:14113..147701691679814.6481473-CDS-H-elongata_contig996:14113..14770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig996 14114..14770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig996.17288.1prot_H-elongata_contig996.17288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig996 14114..14770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig996.17288.1

>prot_H-elongata_contig996.17288.1 ID=prot_H-elongata_contig996.17288.1|Name=mRNA_H-elongata_contig996.17288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
VEPETERREGVYSPRSAANGVVGGLHWSTRLSPRLPNGVINASPAAPSIN
DGDHQGVGGTEYRSPKKRRRSTRPSIAPVDMMTFPATPPVLNNRSRAASS
KGKRRASLGARDSAGHYRGGGGGGGAGINDEEDVMLESRVGAGFDHGKMS
DAAFDRMLEEMEADRDNDRGGGGGGKSAADASSPPPGYFDSFQTCEWRLR
PPGAGMGTANATRGPPHLS
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mRNA from alignment at H-elongata_contig996:14114..14772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig996.17288.1 ID=mRNA_H-elongata_contig996.17288.1|Name=mRNA_H-elongata_contig996.17288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=659bp|location=Sequence derived from alignment at H-elongata_contig996:14114..14772+ (Himanthalia elongata Himel1 dioecious)
GTGGAACCCGAGACGGAACGTCGTGAAGGCGTTTACTCTCCAAGATCGGC
CGCGAACGGGGTTGTTGGAGGCTTGCACTGGTCGACGCGCCTCTCCCCAC
GTTTACCGAACGGGGTTATTAATGCTTCTCCTGCCGCGCCATCGATCAAT
GACGGTGATCACCAAGGCGTTGGTGGCACCGAGTACCGCAGTCCCAAGAA
ACGCCGCCGGTCGACCCGCCCATCGATAGCTCCAGTGGACATGATGACCT
TCCCCGCCACGCCGCCTGTGCTGAACAACCGGAGTCGCGCGGCAAGCAGC
AAGGGCAAGCGGCGGGCTTCGCTCGGAGCCAGAGACTCGGCGGGACACTA
TCGTGGAGGTGGTGGTGGAGGCGGGGCGGGAATAAATGATGAGGAAGACG
TGATGCTGGAGTCACGGGTGGGAGCGGGGTTTGACCACGGCAAAATGTCC
GATGCGGCGTTCGACAGGATGCTCGAGGAGATGGAGGCGGACAGAGACAA
CGATCGCGGTGGTGGTGGCGGTGGCAAGAGCGCGGCCGACGCGAGCTCCC
CACCTCCGGGGTACTTCGACTCCTTCCAGACGTGCGAGTGGCGGTTGCGC
CCGCCGGGGGCGGGGATGGGAACAGCCAACGCCACAAGAGGTCCGCCCCA
TCTATCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig996:14114..14772+

>mRNA_H-elongata_contig996.17288.1 ID=mRNA_H-elongata_contig996.17288.1|Name=mRNA_H-elongata_contig996.17288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig996:14114..14772+ (Himanthalia elongata Himel1 dioecious)
GTGGAACCCGAGACGGAACGTCGTGAAGGCGTTTACTCTCCAAGATCGGC
CGCGAACGGGGTTGTTGGAGGCTTGCACTGGTCGACGCGCCTCTCCCCAC
GTTTACCGAACGGGGTTATTAATGCTTCTCCTGCCGCGCCATCGATCAAT
GACGGTGATCACCAAGGCGTTGGTGGCACCGAGTACCGCAGTCCCAAGAA
ACGCCGCCGGTCGACCCGCCCATCGATAGCTCCAGTGGACATGATGACCT
TCCCCGCCACGCCGCCTGTGCTGAACAACCGGAGTCGCGCGGCAAGCAGC
AAGGGCAAGCGGCGGGCTTCGCTCGGAGCCAGAGACTCGGCGGGACACTA
TCGTGGAGGTGGTGGTGGAGGCGGGGCGGGAATAAATGATGAGGAAGACG
TGATGCTGGAGTCACGGGTGGGAGCGGGGTTTGACCACGGCAAAATGTCC
GATGCGGCGTTCGACAGGATGCTCGAGGAGATGGAGGCGGACAGAGACAA
CGATCGCGGTGGTGGTGGCGGTGGCAAGAGCGCGGCCGACGCGAGCTCCC
CACCTCCGGGGTACTTCGACTCCTTCCAGACGTGCGAGTGGCGGTTGCGC
CCGCCGGGGGCGGGGATGGGAACAGCCAACGCCACAAGAGGTCCGCCCCA
TCTATCTGTGGAACCCGAGACGGAACGTCGTGAAGGCGTTTACTCTCCAA
GATCGGCCGCGAACGGGGTTGTTGGAGGCTTGCACTGGTCGACGCGCCTC
TCCCCACGTTTACCGAACGGGGTTATTAATGCTTCTCCTGCCGCGCCATC
GATCAATGACGGTGATCACCAAGGCGTTGGTGGCACCGAGTACCGCAGTC
CCAAGAAACGCCGCCGGTCGACCCGCCCATCGATAGCTCCAGTGGACATG
ATGACCTTCCCCGCCACGCCGCCTGTGCTGAACAACCGGAGTCGCGCGGC
AAGCAGCAAGGGCAAGCGGCGGGCTTCGCTCGGAGCCAGAGACTCGGCGG
GACACTATCGTGGAGGTGGTGGTGGAGGCGGGGCGGGAATAAATGATGAG
GAAGACGTGATGCTGGAGTCACGGGTGGGAGCGGGGTTTGACCACGGCAA
AATGTCCGATGCGGCGTTCGACAGGATGCTCGAGGAGATGGAGGCGGACA
GAGACAACGATCGCGGTGGTGGTGGCGGTGGCAAGAGCGCGGCCGACGCG
AGCTCCCCACCTCCGGGGTACTTCGACTCCTTCCAGACGTGCGAGTGGCG
GTTGCGCCCGCCGGGGGCGGGGATGGGAACAGCCAACGCCACAAGAGGTC
CGCCCCATCTATCT
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