prot_H-elongata_contig98839.17223.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig98839.17223.1
Unique Nameprot_H-elongata_contig98839.17223.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length36
Homology
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.520e-14
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            MCYKTGQPILFVGTGQKYTHLRK NV YVIKALFG
Sbjct:  555 MCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 589          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: K8Z840_NANGC (Signal recognition particle receptor subunit alpha n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z840_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 1.720e-10
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALF 34
            MCYKTGQPILFVGTGQKYTHL+K NV  ++  LF
Sbjct:  341 MCYKTGQPILFVGTGQKYTHLKKLNVNLILNCLF 374          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A4D9D5H8_9STRA (SRP54 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5H8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.770e-10
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALF 34
            MCYKTGQPILFVGTGQKYTHL+K NV  ++  LF
Sbjct:  621 MCYKTGQPILFVGTGQKYTHLKKLNVNLILNCLF 654          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A836CAH5_9STRA (Signal recognition particle receptor subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.770e-10
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            MCY TGQPI+FVGTGQKY+HLR+ N ++V+KALF 
Sbjct:  584 MCYHTGQPIVFVGTGQKYSHLRRLNASFVVKALFS 618          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S2BQY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQY7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.530e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            M YKTGQP++FVGTGQKYTHLRK NV  VI+ALF 
Sbjct:  605 MSYKTGQPVMFVGTGQKYTHLRKLNVHSVIRALFS 639          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S2C2X3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2X3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.190e-10
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            M YKTGQP++FVGTGQKYTHL+K NV  VI+ALF 
Sbjct:  561 MSYKTGQPVMFVGTGQKYTHLKKLNVNSVIRALFS 595          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A0G4EVP2_VITBC (SRP54 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EVP2_VITBC)

HSP 1 Score: 60.1 bits (144), Expect = 1.580e-9
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            M Y TGQP++FVGTGQKYTHLRK NV  V+KAL G
Sbjct:  612 MVYITGQPVIFVGTGQKYTHLRKLNVNTVVKALLG 646          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S2S5V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.580e-9
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            M YKTGQP++FVGTGQKYTHL+K NV  VI++LF 
Sbjct:  610 MSYKTGQPVMFVGTGQKYTHLKKLNVNSVIRSLFS 644          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A0G4HDE6_9ALVE (SRP54 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HDE6_9ALVE)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-8
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            M Y TGQP++FVGTGQKY HLRK NV  VIKAL G
Sbjct:  598 MVYITGQPVVFVGTGQKYPHLRKMNVNTVIKALLG 632          
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S3Y919_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y919_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 1.310e-8
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    1 MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 35
            M Y+TGQP++FVGTGQKYTHLR+ N   ++ ALFG
Sbjct:  279 MTYQTGQPVVFVGTGQKYTHLRRLNAGAIVDALFG 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT5_ECTSI1.520e-1494.29SRP101, alpha subunit of the signal recognition pa... [more]
K8Z840_NANGC1.720e-1076.47Signal recognition particle receptor subunit alpha... [more]
A0A4D9D5H8_9STRA1.770e-1076.47SRP54 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A836CAH5_9STRA1.770e-1071.43Signal recognition particle receptor subunit alpha... [more]
A0A7S2BQY7_9STRA4.530e-1077.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C2X3_9STRA6.190e-1074.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0G4EVP2_VITBC1.580e-974.29SRP54 domain-containing protein n=2 Tax=Vitrella b... [more]
A0A7S2S5V8_9STRA1.580e-971.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4HDE6_9ALVE1.030e-874.29SRP54 domain-containing protein n=1 Tax=Chromera v... [more]
A0A7S3Y919_HETAK1.310e-865.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..35
e-value: 6.4E-8
score: 34.2
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 3..34
e-value: 5.6E-5
score: 22.8
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPROSITEPS00300SRP54coord: 8..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98839contigH-elongata_contig98839:2097..2204 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98839.17223.1mRNA_H-elongata_contig98839.17223.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig98839 2097..2225 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig98839.17223.1 ID=prot_H-elongata_contig98839.17223.1|Name=mRNA_H-elongata_contig98839.17223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000897SRP54_GTPase_dom