mRNA_H-elongata_contig98839.17223.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98839.17223.1
Unique NamemRNA_H-elongata_contig98839.17223.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 8.560e-18
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGAALSMCYKTGQPILFVGTGQKYTHLRK NV YVIKALFG
Sbjct:  548 KVGAALSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 589
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: K8Z840_NANGC (Signal recognition particle receptor subunit alpha n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z840_NANGC)

HSP 1 Score: 72.4 bits (176), Expect = 8.550e-14
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALF 123
            +VGAALSMCYKTGQPILFVGTGQKYTHL+K NV  ++  LF
Sbjct:  334 KVGAALSMCYKTGQPILFVGTGQKYTHLKKLNVNLILNCLF 374
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A4D9D5H8_9STRA (SRP54 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5H8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.930e-14
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALF 123
            +VGAALSMCYKTGQPILFVGTGQKYTHL+K NV  ++  LF
Sbjct:  614 KVGAALSMCYKTGQPILFVGTGQKYTHLKKLNVNLILNCLF 654
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A836CAH5_9STRA (Signal recognition particle receptor subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.930e-14
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGAALSMCY TGQPI+FVGTGQKY+HLR+ N ++V+KALF 
Sbjct:  577 KVGAALSMCYHTGQPIVFVGTGQKYSHLRRLNASFVVKALFS 618
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A0G4EVP2_VITBC (SRP54 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EVP2_VITBC)

HSP 1 Score: 69.7 bits (169), Expect = 8.830e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGAALSM Y TGQP++FVGTGQKYTHLRK NV  V+KAL G
Sbjct:  605 KVGAALSMVYITGQPVIFVGTGQKYTHLRKLNVNTVVKALLG 646
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S2BQY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQY7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.830e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGA LSM YKTGQP++FVGTGQKYTHLRK NV  VI+ALF 
Sbjct:  598 KVGATLSMSYKTGQPVMFVGTGQKYTHLRKLNVHSVIRALFS 639
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S2C2X3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2X3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.210e-12
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGA LSM YKTGQP++FVGTGQKYTHL+K NV  VI+ALF 
Sbjct:  554 KVGATLSMSYKTGQPVMFVGTGQKYTHLKKLNVNSVIRALFS 595
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BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S2S5V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.080e-12
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGA LSM YKTGQP++FVGTGQKYTHL+K NV  VI++LF 
Sbjct:  603 KVGATLSMSYKTGQPVMFVGTGQKYTHLKKLNVNSVIRSLFS 644
[Close]
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A0G4HDE6_9ALVE (SRP54 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HDE6_9ALVE)

HSP 1 Score: 67.4 bits (163), Expect = 5.750e-12
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGAALSM Y TGQP++FVGTGQKY HLRK NV  VIKAL G
Sbjct:  591 KVGAALSMVYITGQPVVFVGTGQKYPHLRKMNVNTVIKALLG 632
[Close]
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Match: A0A7S3Y919_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y919_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 5.950e-12
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QVGAALSMCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG 126
            +VGAALSM Y+TGQP++FVGTGQKYTHLR+ N   ++ ALFG
Sbjct:  272 KVGAALSMTYQTGQPVVFVGTGQKYTHLRRLNAGAIVDALFG 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98839.17223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT5_ECTSI8.560e-1892.86SRP101, alpha subunit of the signal recognition pa... [more]
K8Z840_NANGC8.550e-1478.05Signal recognition particle receptor subunit alpha... [more]
A0A4D9D5H8_9STRA9.930e-1478.05SRP54 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A836CAH5_9STRA9.930e-1473.81Signal recognition particle receptor subunit alpha... [more]
A0A0G4EVP2_VITBC8.830e-1376.19SRP54 domain-containing protein n=2 Tax=Vitrella b... [more]
A0A7S2BQY7_9STRA8.830e-1376.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C2X3_9STRA1.210e-1273.81Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2S5V8_9STRA3.080e-1271.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4HDE6_9ALVE5.750e-1276.19SRP54 domain-containing protein n=1 Tax=Chromera v... [more]
A0A7S3Y919_HETAK5.950e-1269.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98839contigH-elongata_contig98839:2097..2225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue7.5e-12
Seed eggNOG ortholog2880.D7FQT5
Preferred nameSRPR
KEGG koko:K06640,ko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,ko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03060,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0002791,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030867,GO:0030968,GO:0031090,GO:0031175,GO:0031984,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061564,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090087,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1903530
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG0552@1,KOG0781@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02044,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size108
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931377.584278-CDS-H-elongata_contig98839:2096..22041622931377.584278-CDS-H-elongata_contig98839:2096..2204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98839 2097..2204 -
1691679811.5260372-CDS-H-elongata_contig98839:2096..22041691679811.5260372-CDS-H-elongata_contig98839:2096..2204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98839 2097..2204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931377.5962138-UTR-H-elongata_contig98839:2204..22251622931377.5962138-UTR-H-elongata_contig98839:2204..2225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98839 2205..2225 -
1691679811.5427675-UTR-H-elongata_contig98839:2204..22251691679811.5427675-UTR-H-elongata_contig98839:2204..2225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98839 2205..2225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98839.17223.1prot_H-elongata_contig98839.17223.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98839 2097..2204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98839.17223.1

>prot_H-elongata_contig98839.17223.1 ID=prot_H-elongata_contig98839.17223.1|Name=mRNA_H-elongata_contig98839.17223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MCYKTGQPILFVGTGQKYTHLRKFNVTYVIKALFG*
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mRNA from alignment at H-elongata_contig98839:2097..2225-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98839.17223.1 ID=mRNA_H-elongata_contig98839.17223.1|Name=mRNA_H-elongata_contig98839.17223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig98839:2097..2225- (Himanthalia elongata Himel1 dioecious)
CAGGTGGGCGCTGCGCTCTCCATGTGCTACAAGACTGGGCAGCCGATCCT
GTTCGTCGGCACGGGGCAAAAATACACACATCTGAGGAAGTTCAACGTTA
CATACGTAATCAAGGCGCTCTTCGGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig98839:2097..2225-

>mRNA_H-elongata_contig98839.17223.1 ID=mRNA_H-elongata_contig98839.17223.1|Name=mRNA_H-elongata_contig98839.17223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig98839:2097..2225- (Himanthalia elongata Himel1 dioecious)
ATGTGCTACAAGACTGGGCAGCCGATCCTGTTCGTCGGCACGGGGCAAAA
ATACACACATCTGAGGAAGTTCAACGTTACATACGTAATCAAGGCGCTCT
TCGGCTGAATGTGCTACAAGACTGGGCAGCCGATCCTGTTCGTCGGCACG
GGGCAAAAATACACACATCTGAGGAAGTTCAACGTTACATACGTAATCAA
GGCGCTCTTCGGCTGA
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