prot_H-elongata_contig97919.17138.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97919.17138.1
Unique Nameprot_H-elongata_contig97919.17138.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length208
Homology
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: D8LTY2_ECTSI (Signal recognition particle 54 kDa protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTY2_ECTSI)

HSP 1 Score: 360 bits (924), Expect = 1.220e-120
Identity = 185/209 (88.52%), Postives = 202/209 (96.65%), Query Frame = 0
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMT-KGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGEMAQV 208
            +CPFYGSY+EADPVRIADEGVQQF  +KYEVIIVDTSGRHKQEDALF+EMKEIQ+AVQPDN TL+MDATQGQAVF+QAKAFHEAVAVGSVI+TKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLE FDAQSFVSRLLGFGD KGLMRQ+QE+QE SGDPKEMMER++ KG+FTLRD+YKQLSSAMKLGPM+K+MGMIPGMGEMAQ+
Sbjct:  166 RCPFYGSYSEADPVRIADEGVQQFKQEKYEVIIVDTSGRHKQEDALFDEMKEIQEAVQPDNTTLIMDATQGQAVFDQAKAFHEAVAVGSVIITKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLMRQIQESQEGSGDPKEMMERISNKGKFTLRDLYKQLSSAMKLGPMNKVMGMIPGMGEMAQM 374          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A835YYR6_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR6_9STRA)

HSP 1 Score: 301 bits (770), Expect = 5.340e-97
Identity = 153/206 (74.27%), Postives = 179/206 (86.89%), Query Frame = 0
Query:    3 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMG-MIPGMGEMAQ 207
            PFYGSYTEADPVRIA+EGV+QF  D++EVIIVDTSGRHKQEDALFEEM+EIQ AVQPDN   VMDATQGQAV +QA+AFHEAV VGSV++TKLDGHAKGGGA+SAVAAT SPITFLG GEHFDDLEPF A SFVS++LGFGD   L+R+LQ+  +   DPK+MM+RMTKGQFTLRD Y+Q+   +KLGP++KMMG M+PG+ + AQ
Sbjct:  158 PFYGSYTEADPVRIAEEGVEQFRKDRFEVIIVDTSGRHKQEDALFEEMREIQAAVQPDNCVFVMDATQGQAVADQARAFHEAVPVGSVVITKLDGHAKGGGAMSAVAATKSPITFLGSGEHFDDLEPFVASSFVSKMLGFGDFGSLLRELQDTNDPGMDPKKMMDRMTKGQFTLRDFYQQIQGVLKLGPLNKMMGGMMPGIPDTAQ 363          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S2UL07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UL07_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.340e-91
Identity = 146/199 (73.37%), Postives = 170/199 (85.43%), Query Frame = 0
Query:    3 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPG 201
            PFYGSYTEADPV IA+EGVQQF +D YEVIIVDTSGRH+QE ALFEEM+EI  AV PDN   VMDATQGQAV++QA AFH AV VGSVIVTKLDGHAKGGGALSAVAAT SPI FLG GEHFDD +PF+A+SFVS+LLG+GD +GLM ++Q  Q+ S   +E+ME+M+KGQFTLRDMY Q  + MK+GP++K+MGMIPG
Sbjct:   48 PFYGSYTEADPVLIAEEGVQQFKDDGYEVIIVDTSGRHRQESALFEEMQEISAAVLPDNTVFVMDATQGQAVYDQALAFHGAVEVGSVIVTKLDGHAKGGGALSAVAATQSPIIFLGSGEHFDDFDPFNARSFVSKLLGYGDVRGLMEEMQSMQDPSSQ-EELMEKMSKGQFTLRDMYNQFQNVMKIGPLNKVMGMIPG 245          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S4VL55_9STRA (Signal recognition particle 54 kDa protein (Fragment) n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VL55_9STRA)

HSP 1 Score: 286 bits (732), Expect = 2.790e-91
Identity = 145/202 (71.78%), Postives = 173/202 (85.64%), Query Frame = 0
Query:    3 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGE 204
            PFYGSYTEADPV IA+EGV QF  D YEVIIVDTSGRH+QE ALFEEM+EI  AV PDN   VMDATQGQAV++QA+AFH++V VGSVIVTKLDGHAKGGGALSAVAATNSPI FLG GEHFDD +PF+AQSFVS+LLGFGD +G M +++ +  +S   +E+ME+M+KG+FTLRDMYKQ  S MK+GP++K+MGM+PG+ E
Sbjct:  166 PFYGSYTEADPVAIAEEGVAQFAEDGYEVIIVDTSGRHRQESALFEEMQEISAAVSPDNTVFVMDATQGQAVYDQAQAFHDSVPVGSVIVTKLDGHAKGGGALSAVAATNSPIIFLGSGEHFDDFDPFNAQSFVSKLLGFGDVRGFMEEMK-SVHDSKTQEELMEKMSKGEFTLRDMYKQFQSIMKMGPLNKVMGMMPGVPE 366          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: F0Y473_AURAN (Signal recognition particle 54 kDa protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y473_AURAN)

HSP 1 Score: 282 bits (722), Expect = 2.700e-90
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGEM 205
            +CPFYGSYTEADPVRIA EGV QF  +KYEVIIVDTSGRHKQE ALFEEM+EI+ A++P N+  V+DATQGQAV EQA +FHEA+ +GSV++TKLDGHAKGGGALSAVAAT +PI FLG GEHFDD EPF+A SFVSRLLG GD +GL+ Q+++   +   P E+ME+ +KGQFTLRDMY+Q  + MKLGP+SK+M MIPG+  M
Sbjct:  156 RCPFYGSYTEADPVRIAQEGVDQFKAEKYEVIIVDTSGRHKQETALFEEMQEIRAAIEPQNVIFVLDATQGQAVHEQASSFHEAIDIGSVVITKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSRLLGMGDMRGLVEQIKDTIGDDKQP-ELMEKFSKGQFTLRDMYEQFENVMKLGPLSKVMAMIPGIPSM 359          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S2WJL8_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJL8_9STRA)

HSP 1 Score: 279 bits (713), Expect = 7.160e-89
Identity = 139/201 (69.15%), Postives = 170/201 (84.58%), Query Frame = 0
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPG 201
            +CPFYGSYTEADPV+IA +GV+QF ++KYEVIIVDTSGRHKQE  LFEEM+EI+ AV+PDNI  ++DATQGQAV +QA +FHEAV +GS ++TKLDGHAKGGGALSAVAAT +PITFLG GEHFDDLEPF A+SFVSRLLG GD +GL+  ++E   +  +P E+M++  KG FTLRDMY+Q  + MKLGP+SK+M MIPG
Sbjct:  156 RCPFYGSYTEADPVQIAQDGVEQFKSEKYEVIIVDTSGRHKQESVLFEEMQEIRAAVEPDNIVFILDATQGQAVHDQASSFHEAVDIGSCVITKLDGHAKGGGALSAVAATGAPITFLGSGEHFDDLEPFRAESFVSRLLGMGDMRGLVETIKETVGDDKNP-ELMDKFAKGVFTLRDMYEQFQNVMKLGPLSKVMSMIPG 355          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A1Z5JT64_FISSO (Signal recognition particle subunit SRP54 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT64_FISSO)

HSP 1 Score: 280 bits (716), Expect = 1.030e-88
Identity = 143/200 (71.50%), Postives = 170/200 (85.00%), Query Frame = 0
Query:    3 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGM 202
            PFYGSYTEADPV IA++GV QF  ++YE+IIVDTSGRHKQE+ALFEEM+EI  AVQPDN  LV+DATQGQAV++QA AFH AV VGSVI+TKLDGHAKGGGALSAV+AT SPI FLG GEHFDDLEPF+AQSFVS+LLGFGD +GLM  +  +  +    +E+M++M++G+FTLRDMY Q S  M LGPM+K+MGMIPGM
Sbjct:  176 PFYGSYTEADPVIIAEKGVNQFIKERYEIIIVDTSGRHKQEEALFEEMQEIAAAVQPDNCVLVVDATQGQAVYDQALAFHNAVDVGSVIITKLDGHAKGGGALSAVSATQSPIIFLGSGEHFDDLEPFNAQSFVSKLLGFGDIRGLMDAMN-SVSDGKSQEELMKKMSRGEFTLRDMYNQFSKVMNLGPMNKLMGMIPGM 374          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S3ZR98_9STRA (Signal recognition particle 54 kDa protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR98_9STRA)

HSP 1 Score: 276 bits (707), Expect = 4.120e-88
Identity = 143/207 (69.08%), Postives = 172/207 (83.09%), Query Frame = 0
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPK--EMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGEM 205
            +CPFYGSYTEADPV IA EGV QF  +KYEVIIVDTSGRH+QE ALFEEM+EI+ A++PDN+  V+DATQGQAV EQA +FHEA+ +GSV+VTKLDGHAKGGGALSAVAAT +PI FLG GEHFDD EPF A+SFVSRLLG GD   L++Q+++     GD K  EMME+ +KG+FTLRDMY+Q  + MKLGP+SK+M MIPG+ +M
Sbjct:  156 RCPFYGSYTEADPVAIAAEGVAQFRKEKYEVIIVDTSGRHRQEAALFEEMQEIRVAIEPDNVVFVLDATQGQAVHEQATSFHEAIDIGSVVVTKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFVARSFVSRLLGMGDMSTLVKQIKDT---IGDDKNDEMMEKFSKGEFTLRDMYEQFENVMKLGPLSKVMAMIPGIPQM 359          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A448YZ54_9STRA (SRP54 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YZ54_9STRA)

HSP 1 Score: 280 bits (716), Expect = 4.570e-88
Identity = 142/202 (70.30%), Postives = 168/202 (83.17%), Query Frame = 0
Query:    3 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGE 204
            PFYGSYT+ADPV IA+EGV QF  + YEVIIVDTSGRH+QE  L EEM+EI  AV PDN+ LVMDATQGQAVF+QA+AF  AV VGSV++TKLDGHAKGGGALSAVAAT SPI FLG GEHFDDLEPF+AQSF+S+LLGFGD +GLM  +  + +   D +E+ME+M+KG+FTLRDMYKQ    M +GP++KMMGM+PGM E
Sbjct:  175 PFYGSYTQADPVAIAEEGVDQFVKEHYEVIIVDTSGRHRQEAGLLEEMQEISAAVAPDNVVLVMDATQGQAVFDQAQAFSNAVDVGSVVITKLDGHAKGGGALSAVAATESPIIFLGSGEHFDDLEPFNAQSFISKLLGFGDVRGLMEAMNGSPD---DKEELMEKMSKGEFTLRDMYKQFQRVMNMGPLNKMMGMVPGMPE 373          
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7R9U9B8_9STRA (Signal recognition particle 54 kDa protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9B8_9STRA)

HSP 1 Score: 276 bits (707), Expect = 7.270e-88
Identity = 143/202 (70.79%), Postives = 171/202 (84.65%), Query Frame = 0
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGM 202
            +CPFYGSYTEADPVRIA+EGV QF +D YEVIIVDTSGRH+QEDALFEEM+EI+ AV+PD+I LV+D TQGQAVF QA AF+++V VGSVI+TKLDGHAKGGGAL AVAAT +PI+FLG GEHFDDL+ F   SFVSRLLG GD +GL+ +L+E  +E    +E+ ER +KGQFTLRDMY+Q  S MKLGP+ K+MGM+PGM
Sbjct:  181 RCPFYGSYTEADPVRIAEEGVAQFRSDNYEVIIVDTSGRHRQEDALFEEMQEIRAAVEPDHIILVVDGTQGQAVFAQASAFNDSVNVGSVILTKLDGHAKGGGALGAVAATGAPISFLGTGEHFDDLDVFQPSSFVSRLLGMGDVRGLVEELKEVVDEEKQ-EELAERFSKGQFTLRDMYEQFQSVMKLGPIGKVMGMLPGM 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTY2_ECTSI1.220e-12088.52Signal recognition particle 54 kDa protein (Fragme... [more]
A0A835YYR6_9STRA5.340e-9774.27Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A7S2UL07_9STRA1.340e-9173.37Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4VL55_9STRA2.790e-9171.78Signal recognition particle 54 kDa protein (Fragme... [more]
F0Y473_AURAN2.700e-9069.27Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A7S2WJL8_9STRA7.160e-8969.15Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A1Z5JT64_FISSO1.030e-8871.50Signal recognition particle subunit SRP54 n=2 Tax=... [more]
A0A7S3ZR98_9STRA4.120e-8869.08Signal recognition particle 54 kDa protein n=2 Tax... [more]
A0A448YZ54_9STRA4.570e-8870.30SRP54 domain-containing protein n=2 Tax=Pseudo-nit... [more]
A0A7R9U9B8_9STRA7.270e-8870.79Signal recognition particle 54 kDa protein (Fragme... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainSMARTSM00962SRP54_3coord: 4..141
e-value: 3.4E-32
score: 123.0
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 3..141
e-value: 3.7E-49
score: 167.0
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPROSITEPS00300SRP54coord: 114..127
NoneNo IPR availableGENE3D3.40.50.300coord: 1..148
e-value: 5.5E-49
score: 168.4
NoneNo IPR availablePANTHERPTHR11564:SF5SIGNAL RECOGNITION PARTICLE 54 KDA PROTEINcoord: 2..206
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 149..208
e-value: 7.0E-13
score: 50.7
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 143..206
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 173..205
e-value: 3.5E-8
score: 34.0
IPR022941Signal recognition particle, SRP54 subunitPANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 2..206
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97919contigH-elongata_contig97919:253..1823 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97919.17138.1mRNA_H-elongata_contig97919.17138.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97919 253..1823 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97919.17138.1 ID=prot_H-elongata_contig97919.17138.1|Name=mRNA_H-elongata_contig97919.17138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEM
KEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAK
GGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMR
QLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIP
GMGEMAQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000897SRP54_GTPase_dom
IPR036891Signal_recog_part_SRP54_M_sf
IPR004125Signal_recog_particle_SRP54_M
IPR022941SRP54
IPR027417P-loop_NTPase