mRNA_H-elongata_contig97919.17138.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97919.17138.1
Unique NamemRNA_H-elongata_contig97919.17138.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: D8LTY2_ECTSI (Signal recognition particle 54 kDa protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTY2_ECTSI)

HSP 1 Score: 360 bits (924), Expect = 1.220e-120
Identity = 185/209 (88.52%), Postives = 202/209 (96.65%), Query Frame = 1 
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMT-KGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGEMAQV 624
            +CPFYGSY+EADPVRIADEGVQQF  +KYEVIIVDTSGRHKQEDALF+EMKEIQ+AVQPDN TL+MDATQGQAVF+QAKAFHEAVAVGSVI+TKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLE FDAQSFVSRLLGFGD KGLMRQ+QE+QE SGDPKEMMER++ KG+FTLRD+YKQLSSAMKLGPM+K+MGMIPGMGEMAQ+
Sbjct:  166 RCPFYGSYSEADPVRIADEGVQQFKQEKYEVIIVDTSGRHKQEDALFDEMKEIQEAVQPDNTTLIMDATQGQAVFDQAKAFHEAVAVGSVIITKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLMRQIQESQEGSGDPKEMMERISNKGKFTLRDLYKQLSSAMKLGPMNKVMGMIPGMGEMAQM 374
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A835YYR6_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR6_9STRA)

HSP 1 Score: 301 bits (770), Expect = 5.340e-97
Identity = 153/206 (74.27%), Postives = 179/206 (86.89%), Query Frame = 1 
Query:    7 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMG-MIPGMGEMAQ 621
            PFYGSYTEADPVRIA+EGV+QF  D++EVIIVDTSGRHKQEDALFEEM+EIQ AVQPDN   VMDATQGQAV +QA+AFHEAV VGSV++TKLDGHAKGGGA+SAVAAT SPITFLG GEHFDDLEPF A SFVS++LGFGD   L+R+LQ+  +   DPK+MM+RMTKGQFTLRD Y+Q+   +KLGP++KMMG M+PG+ + AQ
Sbjct:  158 PFYGSYTEADPVRIAEEGVEQFRKDRFEVIIVDTSGRHKQEDALFEEMREIQAAVQPDNCVFVMDATQGQAVADQARAFHEAVPVGSVVITKLDGHAKGGGAMSAVAATKSPITFLGSGEHFDDLEPFVASSFVSKMLGFGDFGSLLRELQDTNDPGMDPKKMMDRMTKGQFTLRDFYQQIQGVLKLGPLNKMMGGMMPGIPDTAQ 363
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S2UL07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UL07_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.340e-91
Identity = 146/199 (73.37%), Postives = 170/199 (85.43%), Query Frame = 1 
Query:    7 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPG 603
            PFYGSYTEADPV IA+EGVQQF +D YEVIIVDTSGRH+QE ALFEEM+EI  AV PDN   VMDATQGQAV++QA AFH AV VGSVIVTKLDGHAKGGGALSAVAAT SPI FLG GEHFDD +PF+A+SFVS+LLG+GD +GLM ++Q  Q+ S   +E+ME+M+KGQFTLRDMY Q  + MK+GP++K+MGMIPG
Sbjct:   48 PFYGSYTEADPVLIAEEGVQQFKDDGYEVIIVDTSGRHRQESALFEEMQEISAAVLPDNTVFVMDATQGQAVYDQALAFHGAVEVGSVIVTKLDGHAKGGGALSAVAATQSPIIFLGSGEHFDDFDPFNARSFVSKLLGYGDVRGLMEEMQSMQDPSSQ-EELMEKMSKGQFTLRDMYNQFQNVMKIGPLNKVMGMIPG 245
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S4VL55_9STRA (Signal recognition particle 54 kDa protein (Fragment) n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VL55_9STRA)

HSP 1 Score: 286 bits (732), Expect = 2.790e-91
Identity = 145/202 (71.78%), Postives = 173/202 (85.64%), Query Frame = 1 
Query:    7 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGE 612
            PFYGSYTEADPV IA+EGV QF  D YEVIIVDTSGRH+QE ALFEEM+EI  AV PDN   VMDATQGQAV++QA+AFH++V VGSVIVTKLDGHAKGGGALSAVAATNSPI FLG GEHFDD +PF+AQSFVS+LLGFGD +G M +++ +  +S   +E+ME+M+KG+FTLRDMYKQ  S MK+GP++K+MGM+PG+ E
Sbjct:  166 PFYGSYTEADPVAIAEEGVAQFAEDGYEVIIVDTSGRHRQESALFEEMQEISAAVSPDNTVFVMDATQGQAVYDQAQAFHDSVPVGSVIVTKLDGHAKGGGALSAVAATNSPIIFLGSGEHFDDFDPFNAQSFVSKLLGFGDVRGFMEEMK-SVHDSKTQEELMEKMSKGEFTLRDMYKQFQSIMKMGPLNKVMGMMPGVPE 366
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: F0Y473_AURAN (Signal recognition particle 54 kDa protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y473_AURAN)

HSP 1 Score: 282 bits (722), Expect = 2.700e-90
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 1 
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGEM 615
            +CPFYGSYTEADPVRIA EGV QF  +KYEVIIVDTSGRHKQE ALFEEM+EI+ A++P N+  V+DATQGQAV EQA +FHEA+ +GSV++TKLDGHAKGGGALSAVAAT +PI FLG GEHFDD EPF+A SFVSRLLG GD +GL+ Q+++   +   P E+ME+ +KGQFTLRDMY+Q  + MKLGP+SK+M MIPG+  M
Sbjct:  156 RCPFYGSYTEADPVRIAQEGVDQFKAEKYEVIIVDTSGRHKQETALFEEMQEIRAAIEPQNVIFVLDATQGQAVHEQASSFHEAIDIGSVVITKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSRLLGMGDMRGLVEQIKDTIGDDKQP-ELMEKFSKGQFTLRDMYEQFENVMKLGPLSKVMAMIPGIPSM 359
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S2WJL8_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJL8_9STRA)

HSP 1 Score: 279 bits (713), Expect = 7.160e-89
Identity = 139/201 (69.15%), Postives = 170/201 (84.58%), Query Frame = 1 
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPG 603
            +CPFYGSYTEADPV+IA +GV+QF ++KYEVIIVDTSGRHKQE  LFEEM+EI+ AV+PDNI  ++DATQGQAV +QA +FHEAV +GS ++TKLDGHAKGGGALSAVAAT +PITFLG GEHFDDLEPF A+SFVSRLLG GD +GL+  ++E   +  +P E+M++  KG FTLRDMY+Q  + MKLGP+SK+M MIPG
Sbjct:  156 RCPFYGSYTEADPVQIAQDGVEQFKSEKYEVIIVDTSGRHKQESVLFEEMQEIRAAVEPDNIVFILDATQGQAVHDQASSFHEAVDIGSCVITKLDGHAKGGGALSAVAATGAPITFLGSGEHFDDLEPFRAESFVSRLLGMGDMRGLVETIKETVGDDKNP-ELMDKFAKGVFTLRDMYEQFQNVMKLGPLSKVMSMIPG 355
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A1Z5JT64_FISSO (Signal recognition particle subunit SRP54 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT64_FISSO)

HSP 1 Score: 280 bits (716), Expect = 1.030e-88
Identity = 143/200 (71.50%), Postives = 170/200 (85.00%), Query Frame = 1 
Query:    7 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGM 606
            PFYGSYTEADPV IA++GV QF  ++YE+IIVDTSGRHKQE+ALFEEM+EI  AVQPDN  LV+DATQGQAV++QA AFH AV VGSVI+TKLDGHAKGGGALSAV+AT SPI FLG GEHFDDLEPF+AQSFVS+LLGFGD +GLM  +  +  +    +E+M++M++G+FTLRDMY Q S  M LGPM+K+MGMIPGM
Sbjct:  176 PFYGSYTEADPVIIAEKGVNQFIKERYEIIIVDTSGRHKQEEALFEEMQEIAAAVQPDNCVLVVDATQGQAVYDQALAFHNAVDVGSVIITKLDGHAKGGGALSAVSATQSPIIFLGSGEHFDDLEPFNAQSFVSKLLGFGDIRGLMDAMN-SVSDGKSQEELMKKMSRGEFTLRDMYNQFSKVMNLGPMNKLMGMIPGM 374
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7S3ZR98_9STRA (Signal recognition particle 54 kDa protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR98_9STRA)

HSP 1 Score: 276 bits (707), Expect = 4.120e-88
Identity = 143/207 (69.08%), Postives = 172/207 (83.09%), Query Frame = 1 
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPK--EMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGEM 615
            +CPFYGSYTEADPV IA EGV QF  +KYEVIIVDTSGRH+QE ALFEEM+EI+ A++PDN+  V+DATQGQAV EQA +FHEA+ +GSV+VTKLDGHAKGGGALSAVAAT +PI FLG GEHFDD EPF A+SFVSRLLG GD   L++Q+++     GD K  EMME+ +KG+FTLRDMY+Q  + MKLGP+SK+M MIPG+ +M
Sbjct:  156 RCPFYGSYTEADPVAIAAEGVAQFRKEKYEVIIVDTSGRHRQEAALFEEMQEIRVAIEPDNVVFVLDATQGQAVHEQATSFHEAIDIGSVVVTKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFVARSFVSRLLGMGDMSTLVKQIKDT---IGDDKNDEMMEKFSKGEFTLRDMYEQFENVMKLGPLSKVMAMIPGIPQM 359
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A448YZ54_9STRA (SRP54 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YZ54_9STRA)

HSP 1 Score: 280 bits (716), Expect = 4.570e-88
Identity = 142/202 (70.30%), Postives = 168/202 (83.17%), Query Frame = 1 
Query:    7 PFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGMGE 612
            PFYGSYT+ADPV IA+EGV QF  + YEVIIVDTSGRH+QE  L EEM+EI  AV PDN+ LVMDATQGQAVF+QA+AF  AV VGSV++TKLDGHAKGGGALSAVAAT SPI FLG GEHFDDLEPF+AQSF+S+LLGFGD +GLM  +  + +   D +E+ME+M+KG+FTLRDMYKQ    M +GP++KMMGM+PGM E
Sbjct:  175 PFYGSYTQADPVAIAEEGVDQFVKEHYEVIIVDTSGRHRQEAGLLEEMQEISAAVAPDNVVLVMDATQGQAVFDQAQAFSNAVDVGSVVITKLDGHAKGGGALSAVAATESPIIFLGSGEHFDDLEPFNAQSFISKLLGFGDVRGLMEAMNGSPD---DKEELMEKMSKGEFTLRDMYKQFQRVMNMGPLNKMMGMVPGMPE 373
[Close]
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Match: A0A7R9U9B8_9STRA (Signal recognition particle 54 kDa protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9B8_9STRA)

HSP 1 Score: 276 bits (707), Expect = 7.270e-88
Identity = 143/202 (70.79%), Postives = 171/202 (84.65%), Query Frame = 1 
Query:    1 QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEMKEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMRQLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIPGM 606
            +CPFYGSYTEADPVRIA+EGV QF +D YEVIIVDTSGRH+QEDALFEEM+EI+ AV+PD+I LV+D TQGQAVF QA AF+++V VGSVI+TKLDGHAKGGGAL AVAAT +PI+FLG GEHFDDL+ F   SFVSRLLG GD +GL+ +L+E  +E    +E+ ER +KGQFTLRDMY+Q  S MKLGP+ K+MGM+PGM
Sbjct:  181 RCPFYGSYTEADPVRIAEEGVAQFRSDNYEVIIVDTSGRHRQEDALFEEMQEIRAAVEPDHIILVVDGTQGQAVFAQASAFNDSVNVGSVILTKLDGHAKGGGALGAVAATGAPISFLGTGEHFDDLDVFQPSSFVSRLLGMGDVRGLVEELKEVVDEEKQ-EELAERFSKGQFTLRDMYEQFQSVMKLGPIGKVMGMLPGM 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97919.17138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTY2_ECTSI1.220e-12088.52Signal recognition particle 54 kDa protein (Fragme... [more]
A0A835YYR6_9STRA5.340e-9774.27Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A7S2UL07_9STRA1.340e-9173.37Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4VL55_9STRA2.790e-9171.78Signal recognition particle 54 kDa protein (Fragme... [more]
F0Y473_AURAN2.700e-9069.27Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A7S2WJL8_9STRA7.160e-8969.15Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A1Z5JT64_FISSO1.030e-8871.50Signal recognition particle subunit SRP54 n=2 Tax=... [more]
A0A7S3ZR98_9STRA4.120e-8869.08Signal recognition particle 54 kDa protein n=2 Tax... [more]
A0A448YZ54_9STRA4.570e-8870.30SRP54 domain-containing protein n=2 Tax=Pseudo-nit... [more]
A0A7R9U9B8_9STRA7.270e-8870.79Signal recognition particle 54 kDa protein (Fragme... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97919contigH-elongata_contig97919:253..1823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.5
Seed ortholog evalue5.2e-97
Seed eggNOG ortholog2880.D8LTY2
Preferred nameSRP54
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005048,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006617,GO:0006810,GO:0006886,GO:0008104,GO:0008144,GO:0008150,GO:0008312,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022607,GO:0030942,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0034622,GO:0035639,GO:0036094,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065003,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
EC3.6.5.4
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSRP54, GTPase subunit of the signal recognition particle
Ec32 orthologEc-12_003910.1
Exons5
Model size624
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97919.17138.1prot_H-elongata_contig97919.17138.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97919 253..1823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931369.8243701-CDS-H-elongata_contig97919:252..3421622931369.8243701-CDS-H-elongata_contig97919:252..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 253..342 +
1691679808.371233-CDS-H-elongata_contig97919:252..3421691679808.371233-CDS-H-elongata_contig97919:252..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 253..342 +
1622931369.8387249-CDS-H-elongata_contig97919:587..7441622931369.8387249-CDS-H-elongata_contig97919:587..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 588..744 +
1691679808.3844588-CDS-H-elongata_contig97919:587..7441691679808.3844588-CDS-H-elongata_contig97919:587..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 588..744 +
1622931369.8588855-CDS-H-elongata_contig97919:1011..11451622931369.8588855-CDS-H-elongata_contig97919:1011..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 1012..1145 +
1691679808.398126-CDS-H-elongata_contig97919:1011..11451691679808.398126-CDS-H-elongata_contig97919:1011..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 1012..1145 +
1622931369.8701923-CDS-H-elongata_contig97919:1382..14981622931369.8701923-CDS-H-elongata_contig97919:1382..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 1383..1498 +
1691679808.4111025-CDS-H-elongata_contig97919:1382..14981691679808.4111025-CDS-H-elongata_contig97919:1382..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 1383..1498 +
1622931369.881871-CDS-H-elongata_contig97919:1696..18231622931369.881871-CDS-H-elongata_contig97919:1696..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 1697..1823 +
1691679808.4201293-CDS-H-elongata_contig97919:1696..18231691679808.4201293-CDS-H-elongata_contig97919:1696..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97919 1697..1823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97919.17138.1

>prot_H-elongata_contig97919.17138.1 ID=prot_H-elongata_contig97919.17138.1|Name=mRNA_H-elongata_contig97919.17138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
QCPFYGSYTEADPVRIADEGVQQFCNDKYEVIIVDTSGRHKQEDALFEEM
KEIQDAVQPDNITLVMDATQGQAVFEQAKAFHEAVAVGSVIVTKLDGHAK
GGGALSAVAATNSPITFLGGGEHFDDLEPFDAQSFVSRLLGFGDAKGLMR
QLQENQEESGDPKEMMERMTKGQFTLRDMYKQLSSAMKLGPMSKMMGMIP
GMGEMAQV
back to top

mRNA from alignment at H-elongata_contig97919:253..1823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97919.17138.1 ID=mRNA_H-elongata_contig97919.17138.1|Name=mRNA_H-elongata_contig97919.17138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1571bp|location=Sequence derived from alignment at H-elongata_contig97919:253..1823+ (Himanthalia elongata Himel1 dioecious)
CAGTGCCCGTTCTACGGCAGCTATACCGAGGCGGACCCCGTTCGCATAGC
GGACGAGGGCGTGCAGCAGTTCTGCAACGATAAATACGAGGTAGGTGGGC
GTGTGTTTCTTACTTCTTTTGAGTACGGCAGCGTCATTTTCCCCTCTTTT
TTACTAGTGTTACCACGGTTAAAATATGCTAGTGTTATCTCGTGCTGTTG
CCATAATGTCGAGGAAGGCTTTCTTCTCGGCGTGGGGAAGGTGCAGTGGG
AACTGTGTGTGTTTAGTTGGGAGGCACTCGTGTGCCATGAGAGCATTAAA
AAAACCCTCTCGCCCCGACGTCCGACCCCATGTAGGTGATCATCGTGGAT
ACCTCTGGACGGCACAAGCAGGAGGACGCCCTGTTCGAAGAGATGAAGGA
GATTCAGGATGCCGTGCAGCCCGACAACATCACACTCGTCATGGATGCCA
CGCAGGGACAAGCAGTCTTTGAACAGGCGAAAGCCTTCCACGGTGAGAAG
AGCCCAGTTCGCACTGCGGTGTTTTTGCGACCACCGCGGTAGATTCTTCT
CCGTTTCCGCAAAAGTTTTAATTTGTAGTGCTTCCACCCCATCCCTCATC
CGCCAAGATACGCGTTTAAAGAGCAATTCCACCCCTGGGTCTCCCCTCCC
AAGAATGCTTTAGCAATGGTCTATCAGCCAAAACATACGAAACTTGAGTA
ATGTCCCCCTCCCTGTTCCCTTCCGCATCCCCCGTTTCTGTGTCGATGTT
GTGTTGTAGAGGCCGTCGCGGTTGGTTCTGTGATCGTGACCAAGCTTGAC
GGGCACGCCAAGGGAGGTGGGGCTCTTAGTGCCGTTGCTGCGACGAACAG
CCCCATCACATTTCTAGGGGGCGGAGAACACTTCGACGATCTGGTGCGGG
CCTCGCATCGTGTTGCGCCCTAAGAGATGCTTTGTTTTTTGTAAACAAAT
ATGCTTTACGACCCTTGATTTTTTTTCTTACCTTCATTCGCTACGCTCGC
TCCCCCGAAAAGGCTTGTTTGTCTAGAAAGTATGGTCGGAAACGGACGTT
CCTCGCACGGCGATATATATATATATATATGATACCAGTGTGTATGGATA
TGTCGGGCGTGTGTTTTATCCGTTACGTAGGAACCGTTCGACGCGCAGTC
GTTCGTGAGTAGACTACTGGGGTTTGGCGACGCTAAGGGGCTGATGCGGC
AGCTGCAAGAGAACCAGGAAGAATCCGGAGACCCTAAGGAGATGATGTAC
GTTCTCTATTCGCTTGCCGCCGATAGACATGGTTCAGTATTATTAATAGT
ACTCTACTGTTCTACTGTACACGGTGAGACTACTGTACACGGTGAGACGA
TATGTTGTTGAACCCGCCCCTCGCCGAGGTTGCTGCTGCTACTGCTGCTG
TGAAGTTCGTTTTAACTTCGTTAGCTCTTTCTTTCTAAATTCAGGGAGCG
CATGACCAAGGGACAGTTCACCCTTCGAGATATGTACAAGCAGTTGAGCT
CCGCCATGAAGCTCGGGCCGATGAGCAAGATGATGGGCATGATCCCCGGC
ATGGGGGAGATGGCACAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig97919:253..1823+

>mRNA_H-elongata_contig97919.17138.1 ID=mRNA_H-elongata_contig97919.17138.1|Name=mRNA_H-elongata_contig97919.17138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig97919:253..1823+ (Himanthalia elongata Himel1 dioecious)
CAGTGCCCGTTCTACGGCAGCTATACCGAGGCGGACCCCGTTCGCATAGC
GGACGAGGGCGTGCAGCAGTTCTGCAACGATAAATACGAGCAGTGCCCGT
TCTACGGCAGCTATACCGAGGCGGACCCCGTTCGCATAGCGGACGAGGGC
GTGCAGCAGTTCTGCAACGATAAATACGAGGTGATCATCGTGGATACCTC
TGGACGGCACAAGCAGGAGGACGCCCTGTTCGAAGAGATGAAGGAGATTC
AGGATGCCGTGCAGCCCGACAACATCACACTCGTCATGGATGCCACGCAG
GGACAAGCAGTCTTTGAACAGGCGAAAGCCTTCCACGGTGATCATCGTGG
ATACCTCTGGACGGCACAAGCAGGAGGACGCCCTGTTCGAAGAGATGAAG
GAGATTCAGGATGCCGTGCAGCCCGACAACATCACACTCGTCATGGATGC
CACGCAGGGACAAGCAGTCTTTGAACAGGCGAAAGCCTTCCACGAGGCCG
TCGCGGTTGGTTCTGTGATCGTGACCAAGCTTGACGGGCACGCCAAGGGA
GGTGGGGCTCTTAGTGCCGTTGCTGCGACGAACAGCCCCATCACATTTCT
AGGGGGCGGAGAACACTTCGACGATCTGAGGCCGTCGCGGTTGGTTCTGT
GATCGTGACCAAGCTTGACGGGCACGCCAAGGGAGGTGGGGCTCTTAGTG
CCGTTGCTGCGACGAACAGCCCCATCACATTTCTAGGGGGCGGAGAACAC
TTCGACGATCTGGAACCGTTCGACGCGCAGTCGTTCGTGAGTAGACTACT
GGGGTTTGGCGACGCTAAGGGGCTGATGCGGCAGCTGCAAGAGAACCAGG
AAGAATCCGGAGACCCTAAGGAGATGATGAACCGTTCGACGCGCAGTCGT
TCGTGAGTAGACTACTGGGGTTTGGCGACGCTAAGGGGCTGATGCGGCAG
CTGCAAGAGAACCAGGAAGAATCCGGAGACCCTAAGGAGATGATGGAGCG
CATGACCAAGGGACAGTTCACCCTTCGAGATATGTACAAGCAGTTGAGCT
CCGCCATGAAGCTCGGGCCGATGAGCAAGATGATGGGCATGATCCCCGGC
ATGGGGGAGATGGCACAGGTGGGAGCGCATGACCAAGGGACAGTTCACCC
TTCGAGATATGTACAAGCAGTTGAGCTCCGCCATGAAGCTCGGGCCGATG
AGCAAGATGATGGGCATGATCCCCGGCATGGGGGAGATGGCACAGGTG
back to top