prot_H-elongata_contig97899.17134.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97899.17134.1
Unique Nameprot_H-elongata_contig97899.17134.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
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BLAST of mRNA_H-elongata_contig97899.17134.1 vs. uniprot
Match: V5G468_ANOGL (Transposon Ty3-I Gag-Pol polyprotein (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5G468_ANOGL)

HSP 1 Score: 51.6 bits (122), Expect = 5.640e-6
Identity = 33/90 (36.67%), Postives = 45/90 (50.00%), Query Frame = 0 
Query:    1 MPQGAAGAPAWFVSV-TRLVTCGL--ENTRMYLDDAIGSDDSSVKHVATLATFFARLRLRNLKLSPNKTRTGAARADALGYVISHDGVRP 87
            MP G  GAPA F  + T  V  GL  +  ++YLDD +       +H   L   F RLRL  L++SP+K +      D LG+ I  D + P
Sbjct:   30 MPFGLKGAPATFQRLMTHEVLSGLLHDCVKVYLDDILVYSRDIQEHTKHLGLVFERLRLHQLRISPDKCKFATRSLDYLGHRIDEDVIVP 119
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BLAST of mRNA_H-elongata_contig97899.17134.1 vs. uniprot
Match: A0A0G4FPU1_9ALVE (Reverse transcriptase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FPU1_9ALVE)

HSP 1 Score: 51.2 bits (121), Expect = 2.210e-5
Identity = 32/91 (35.16%), Postives = 43/91 (47.25%), Query Frame = 0 
Query:    1 MPQGAAGAPAWFVSVTRLVTCGL--ENTRMYLDDAIGSDDSSVKHVATLATFFARLRLRNLKLSPNKTRTGAARADALGYVISHDGVRPNL 89
            M QG   AP  F    +LV  GL  E   +Y+DD I        H+  L T   R++   LKL   K +        LG+++S DGVRP+L
Sbjct:  332 MAQGLINAPLTFQRAMQLVLSGLPRELALVYIDDLIVFSKDFDSHLEDLRTLLDRVQKCGLKLKVEKAQFALLEVKYLGFLLSADGVRPDL 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97899.17134.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
V5G468_ANOGL5.640e-636.67Transposon Ty3-I Gag-Pol polyprotein (Fragment) n=... [more]
A0A0G4FPU1_9ALVE2.210e-535.16Reverse transcriptase domain-containing protein n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 8..80
e-value: 1.2E-11
score: 46.4
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 1..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97899contigH-elongata_contig97899:961..1236 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97899.17134.1mRNA_H-elongata_contig97899.17134.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97899 773..1236 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97899.17134.1 ID=prot_H-elongata_contig97899.17134.1|Name=mRNA_H-elongata_contig97899.17134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MPQGAAGAPAWFVSVTRLVTCGLENTRMYLDDAIGSDDSSVKHVATLATF
FARLRLRNLKLSPNKTRTGAARADALGYVISHDGVRPNLCA*
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