prot_H-elongata_contig97860.17128.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97860.17128.1
Unique Nameprot_H-elongata_contig97860.17128.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 85.9 bits (211), Expect = 1.450e-17
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 91
            +YK K   DG +E+YK RLVAQGF Q+EG++Y   +SP     +++  LA AVAK  EL   D  NAFL  D++EE+Y+++PE + K TG
Sbjct:  130 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 218          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2I0J196_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J196_PUNGR)

HSP 1 Score: 81.6 bits (200), Expect = 1.700e-17
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    1 MLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEY 86
            M+YK K   DG VE+YK RLVA+GF QVEGV++   ++P      ++ LLA AV K  E+   D  NAFL  D+DEE+Y+ +P  Y
Sbjct:    1 MVYKIKRWADGSVERYKARLVAKGFTQVEGVDFNETFAPVAKLVTVRCLLAVAVVKGWEIHQMDVNNAFLHGDLDEEVYMRLPPGY 86          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 84.7 bits (208), Expect = 3.820e-17
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 91
            +YK K   DG +E+YK RLVAQGF Q+EG++Y   +SP     +++  LA  VAK  EL   D  NAFL  D++EE+Y+++PE + K TG
Sbjct:  599 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 687          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 5.250e-17
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 91
            +YK K   DG +E+YK RLVAQGF Q+EG++Y   +SP     +++  LA  VAK  EL   D  NAFL  D++EE+Y+++PE + K TG
Sbjct:  853 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 941          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 79.0 bits (193), Expect = 8.960e-17
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEY 86
            +YK K    G+VEKYK RLVA+GF Q+EG ++   ++P      ++ LL+ AVAK  EL   D  NAFL  D++EE+Y+++P+ Y
Sbjct:   31 VYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGY 115          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2I0I0U1_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I0U1_PUNGR)

HSP 1 Score: 81.3 bits (199), Expect = 9.480e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEY 86
            +YK K   DG VE+YK RLVA+GF QVEGV++   ++P      ++ LLA AVAK  E+   D  NAFL  D+DEE+Y+ +P  Y
Sbjct:   31 VYKIKRRADGSVERYKARLVAKGFTQVEGVDFNETFAPVAKLVTVRCLLAVAVAKGWEIHQMDVNNAFLHGDLDEEVYMRLPPGY 115          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: UPI0006A6DEFC (uncharacterized protein LOC106336398 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DEFC)

HSP 1 Score: 83.6 bits (205), Expect = 9.760e-17
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 0
Query:    6 KVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 91
            K   DG VE++K R+VA+G+ Q+EG++Y   +SP      +++LLA A AK   + H D  NAFL  D+DEE+Y+++P+ Y + TG
Sbjct:  751 KYNPDGTVERHKSRVVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLAVAAAKQWSITHLDVSNAFLNGDLDEEIYMKLPQGYEELTG 836          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 83.6 bits (205), Expect = 9.820e-17
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIP 83
            ++K K G DG+VEKYK RLVAQGF QVEG++Y   ++P   + +I++LLA A   D E+   D ++AFL  +++EE+Y+++P
Sbjct: 1044 VFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVP 1125          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2K3PNF5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PNF5_TRIPR)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-16
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYH 87
            +YK K    G+VEKYK RLVA+G+ QVEG ++   ++P      ++ LL  AVAK  EL   D  NAFL  D+DEE+Y+++PE YH
Sbjct:  371 VYKVKYKATGEVEKYKARLVAKGYTQVEGEDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGDLDEEVYMQVPEGYH 456          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2Z7CXQ0_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CXQ0_9LAMI)

HSP 1 Score: 80.1 bits (196), Expect = 1.430e-16
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 0
Query:    2 LYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIP 83
            +YK K   DG +++YK RLVA+G+ Q+EG +Y   +SPT     +  LLA A +++  L HFD +N FL  D+DEE+Y++IP
Sbjct:   31 VYKIKYNSDGSIDRYKVRLVAKGYMQIEGTDYFETFSPTAKLTTVCCLLAIASSRNWFLSHFDVQNTFLHGDLDEEVYMDIP 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438GNV2_VITVI1.450e-1747.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0J196_PUNGR1.700e-1747.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438E4T4_VITVI3.820e-1746.67Retrovirus-related Pol polyprotein from transposon... [more]
A5BCC7_VITVI5.250e-1746.67Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A2K3JLR7_TRIPR8.960e-1744.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0I0U1_PUNGR9.480e-1748.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0006A6DEFC9.760e-1743.02uncharacterized protein LOC106336398 n=1 Tax=Brass... [more]
A0A0C2WN23_AMAMK9.820e-1746.34Integrase catalytic domain-containing protein (Fra... [more]
A0A2K3PNF5_TRIPR1.310e-1647.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7CXQ0_9LAMI1.430e-1645.12Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..84
e-value: 2.5E-16
score: 60.1
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 3..87
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97860contigH-elongata_contig97860:1321..1599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97860.17128.1mRNA_H-elongata_contig97860.17128.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97860 1291..1599 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97860.17128.1 ID=prot_H-elongata_contig97860.17128.1|Name=mRNA_H-elongata_contig97860.17128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLL
ATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like