mRNA_H-elongata_contig97860.17128.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 95.9 bits (237), Expect = 6.910e-21 Identity = 42/93 (45.16%), Postives = 68/93 (73.12%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIP 279
P+D+ ++G+K ++K K G DG+VEKYK RLVAQGF QVEG++Y ++P + +I++LLA A D E+ D ++AFL +++EE+Y+++P
Sbjct: 1033 PRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVP 1125
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 94.7 bits (234), Expect = 1.640e-20 Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
P +K +G K +YK K DG +E+YK RLVAQGF Q+EG++Y +SP +++ LA AVAK EL D NAFL D++EE+Y+++PE + K TG
Sbjct: 119 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 218
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 93.6 bits (231), Expect = 4.410e-20 Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
P +K +G K +YK K DG +E+YK RLVAQGF Q+EG++Y +SP +++ LA VAK EL D NAFL D++EE+Y+++PE + K TG
Sbjct: 588 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 687
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 93.2 bits (230), Expect = 4.810e-20 Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
PK++ VVG+K +++ K G +GK+EKYK RLVAQGF QV+G++YT ++P +I+ LL+ A D E+ D ++AFL D+DEE+Y++ P +H G
Sbjct: 32 PKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEG 132
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 93.2 bits (230), Expect = 6.070e-20 Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
P +K +G K +YK K DG +E+YK RLVAQGF Q+EG++Y +SP +++ LA VAK EL D NAFL D++EE+Y+++PE + K TG
Sbjct: 842 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 941
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR) HSP 1 Score: 86.7 bits (213), Expect = 1.250e-19 Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEY 288
P K +VG + +YK K G+VEKYK RLVA+GF Q+EG ++ ++P ++ LL+ AVAK EL D NAFL D++EE+Y+++P+ Y
Sbjct: 20 PVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGY 115
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2K3PNF5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PNF5_TRIPR) HSP 1 Score: 91.7 bits (226), Expect = 2.060e-19 Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYH 291
P K +VG K +YK K G+VEKYK RLVA+G+ QVEG ++ ++P ++ LL AVAK EL D NAFL D+DEE+Y+++PE YH
Sbjct: 360 PTCKKIVGCKWVYKVKYKATGEVEKYKARLVAKGYTQVEGEDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGDLDEEVYMQVPEGYH 456
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A6D2HGS3_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HGS3_9BRAS) HSP 1 Score: 91.3 bits (225), Expect = 2.880e-19 Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTGA 306
P K VVG K +Y K DG +E+YK RLVA+GF Q EGV++T +SP ++++LLA A K L H D NAFL +D+DEE+Y+ +P+ Y +G
Sbjct: 875 PPGKNVVGCKWVYTIKYKADGTIERYKARLVAKGFTQQEGVDFTETFSPVAKLTSVKLLLALAAIKGWSLCHMDVSNAFLHSDLDEEIYMSLPQGYTPASGT 976
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: UPI0006A6DEFC (uncharacterized protein LOC106336398 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DEFC) HSP 1 Score: 90.5 bits (223), Expect = 5.340e-19 Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
P K VG K ++ K DG VE++K R+VA+G+ Q+EG++Y +SP +++LLA A AK + H D NAFL D+DEE+Y+++P+ Y + TG
Sbjct: 736 PPGKQSVGCKWIHTIKYNPDGTVERHKSRVVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLAVAAAKQWSITHLDVSNAFLNGDLDEEIYMKLPQGYEELTG 836
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A6D2KBY5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KBY5_9BRAS) HSP 1 Score: 89.0 bits (219), Expect = 1.800e-18 Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTGA 306
P K VVG K +Y K DG +E+YK RLVA+GF Q EGV++T +SP ++++LLA A K L D NAFL +D+DEE+Y+ +P+ Y +G+
Sbjct: 29 PPGKNVVGCKWVYTIKYKADGTIERYKARLVAKGFTQQEGVDFTENFSPVAKLTSVKLLLALAAIKGWSLFQMDVSNAFLHSDLDEEIYMSLPQGYTPSSGS 130 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig97860.17128.1 >prot_H-elongata_contig97860.17128.1 ID=prot_H-elongata_contig97860.17128.1|Name=mRNA_H-elongata_contig97860.17128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp MLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLback to top mRNA from alignment at H-elongata_contig97860:1291..1599+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig97860.17128.1 ID=mRNA_H-elongata_contig97860.17128.1|Name=mRNA_H-elongata_contig97860.17128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig97860:1291..1599+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig97860:1291..1599+ >mRNA_H-elongata_contig97860.17128.1 ID=mRNA_H-elongata_contig97860.17128.1|Name=mRNA_H-elongata_contig97860.17128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig97860:1291..1599+ (Himanthalia elongata Himel1 dioecious)back to top |