mRNA_H-elongata_contig97860.17128.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97860.17128.1
Unique NamemRNA_H-elongata_contig97860.17128.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 95.9 bits (237), Expect = 6.910e-21
Identity = 42/93 (45.16%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIP 279
            P+D+ ++G+K ++K K G DG+VEKYK RLVAQGF QVEG++Y   ++P   + +I++LLA A   D E+   D ++AFL  +++EE+Y+++P
Sbjct: 1033 PRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVP 1125          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 94.7 bits (234), Expect = 1.640e-20
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
            P +K  +G K +YK K   DG +E+YK RLVAQGF Q+EG++Y   +SP     +++  LA AVAK  EL   D  NAFL  D++EE+Y+++PE + K TG
Sbjct:  119 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 218          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 93.6 bits (231), Expect = 4.410e-20
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
            P +K  +G K +YK K   DG +E+YK RLVAQGF Q+EG++Y   +SP     +++  LA  VAK  EL   D  NAFL  D++EE+Y+++PE + K TG
Sbjct:  588 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 687          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 93.2 bits (230), Expect = 4.810e-20
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
            PK++ VVG+K +++ K G +GK+EKYK RLVAQGF QV+G++YT  ++P     +I+ LL+ A   D E+   D ++AFL  D+DEE+Y++ P  +H   G
Sbjct:   32 PKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEG 132          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 6.070e-20
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
            P +K  +G K +YK K   DG +E+YK RLVAQGF Q+EG++Y   +SP     +++  LA  VAK  EL   D  NAFL  D++EE+Y+++PE + K TG
Sbjct:  842 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGF-KATG 941          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 86.7 bits (213), Expect = 1.250e-19
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEY 288
            P  K +VG + +YK K    G+VEKYK RLVA+GF Q+EG ++   ++P      ++ LL+ AVAK  EL   D  NAFL  D++EE+Y+++P+ Y
Sbjct:   20 PVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGY 115          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A2K3PNF5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PNF5_TRIPR)

HSP 1 Score: 91.7 bits (226), Expect = 2.060e-19
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYH 291
            P  K +VG K +YK K    G+VEKYK RLVA+G+ QVEG ++   ++P      ++ LL  AVAK  EL   D  NAFL  D+DEE+Y+++PE YH
Sbjct:  360 PTCKKIVGCKWVYKVKYKATGEVEKYKARLVAKGYTQVEGEDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGDLDEEVYMQVPEGYH 456          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A6D2HGS3_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HGS3_9BRAS)

HSP 1 Score: 91.3 bits (225), Expect = 2.880e-19
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTGA 306
            P  K VVG K +Y  K   DG +E+YK RLVA+GF Q EGV++T  +SP     ++++LLA A  K   L H D  NAFL +D+DEE+Y+ +P+ Y   +G 
Sbjct:  875 PPGKNVVGCKWVYTIKYKADGTIERYKARLVAKGFTQQEGVDFTETFSPVAKLTSVKLLLALAAIKGWSLCHMDVSNAFLHSDLDEEIYMSLPQGYTPASGT 976          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: UPI0006A6DEFC (uncharacterized protein LOC106336398 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DEFC)

HSP 1 Score: 90.5 bits (223), Expect = 5.340e-19
Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTG 303
            P  K  VG K ++  K   DG VE++K R+VA+G+ Q+EG++Y   +SP      +++LLA A AK   + H D  NAFL  D+DEE+Y+++P+ Y + TG
Sbjct:  736 PPGKQSVGCKWIHTIKYNPDGTVERHKSRVVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLAVAAAKQWSITHLDVSNAFLNGDLDEEIYMKLPQGYEELTG 836          
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Match: A0A6D2KBY5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KBY5_9BRAS)

HSP 1 Score: 89.0 bits (219), Expect = 1.800e-18
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 PKDKLVVGTKMLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLLATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTGA 306
            P  K VVG K +Y  K   DG +E+YK RLVA+GF Q EGV++T  +SP     ++++LLA A  K   L   D  NAFL +D+DEE+Y+ +P+ Y   +G+
Sbjct:   29 PPGKNVVGCKWVYTIKYKADGTIERYKARLVAKGFTQQEGVDFTENFSPVAKLTSVKLLLALAAIKGWSLFQMDVSNAFLHSDLDEEIYMSLPQGYTPSSGS 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97860.17128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK6.910e-2145.16Integrase catalytic domain-containing protein (Fra... [more]
A0A438GNV2_VITVI1.640e-2046.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI4.410e-2045.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A2R6NNP3_9APHY4.810e-2044.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BCC7_VITVI6.070e-2045.54Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A2K3JLR7_TRIPR1.250e-1943.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3PNF5_TRIPR2.060e-1947.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2HGS3_9BRAS2.880e-1945.10Integrase catalytic domain-containing protein n=1 ... [more]
UPI0006A6DEFC5.340e-1941.58uncharacterized protein LOC106336398 n=1 Tax=Brass... [more]
A0A6D2KBY5_9BRAS1.800e-1844.12Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97860contigH-elongata_contig97860:1291..1599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.3
Seed ortholog evalue3.2e-14
Seed eggNOG ortholog3711.Bra008452.1-P
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GHHH@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size279
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931368.968032-UTR-H-elongata_contig97860:1290..13201622931368.968032-UTR-H-elongata_contig97860:1290..1320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97860 1291..1320 +
1691679808.0386376-UTR-H-elongata_contig97860:1290..13201691679808.0386376-UTR-H-elongata_contig97860:1290..1320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97860 1291..1320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931368.9833498-CDS-H-elongata_contig97860:1320..15991622931368.9833498-CDS-H-elongata_contig97860:1320..1599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97860 1321..1599 +
1691679808.0560193-CDS-H-elongata_contig97860:1320..15991691679808.0560193-CDS-H-elongata_contig97860:1320..1599Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97860 1321..1599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97860.17128.1prot_H-elongata_contig97860.17128.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97860 1321..1599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97860.17128.1

>prot_H-elongata_contig97860.17128.1 ID=prot_H-elongata_contig97860.17128.1|Name=mRNA_H-elongata_contig97860.17128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MLYKRKVGQDGKVEKYKYRLVAQGFWQVEGVNYTGKYSPTPSTAAIQMLL
ATAVAKDGELRHFDAENAFLTADIDEELYIEIPEEYHKFTGA*
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mRNA from alignment at H-elongata_contig97860:1291..1599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97860.17128.1 ID=mRNA_H-elongata_contig97860.17128.1|Name=mRNA_H-elongata_contig97860.17128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig97860:1291..1599+ (Himanthalia elongata Himel1 dioecious)
CCAAAGGATAAGCTTGTGGTTGGCACGAAAATGCTCTACAAACGAAAAGT CGGACAGGACGGCAAGGTCGAGAAATACAAGTACCGGCTTGTAGCTCAAG GGTTCTGGCAGGTTGAGGGTGTGAACTATACGGGGAAATACTCACCCACG CCATCGACCGCAGCAATCCAGATGCTTTTGGCCACAGCAGTGGCAAAGGA CGGTGAGCTGCGCCATTTCGACGCGGAGAATGCATTCCTGACAGCGGACA TCGATGAGGAATTGTACATTGAGATCCCCGAGGAGTACCATAAGTTTACG GGGGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig97860:1291..1599+

>mRNA_H-elongata_contig97860.17128.1 ID=mRNA_H-elongata_contig97860.17128.1|Name=mRNA_H-elongata_contig97860.17128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig97860:1291..1599+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTACAAACGAAAAGTCGGACAGGACGGCAAGGTCGAGAAATACAA
GTACCGGCTTGTAGCTCAAGGGTTCTGGCAGGTTGAGGGTGTGAACTATA
CGGGGAAATACTCACCCACGCCATCGACCGCAGCAATCCAGATGCTTTTG
GCCACAGCAGTGGCAAAGGACGGTGAGCTGCGCCATTTCGACGCGGAGAA
TGCATTCCTGACAGCGGACATCGATGAGGAATTGTACATTGAGATCCCCG
AGGAGTACCATAAGTTTACGGGGGCATAAATGCTCTACAAACGAAAAGTC
GGACAGGACGGCAAGGTCGAGAAATACAAGTACCGGCTTGTAGCTCAAGG
GTTCTGGCAGGTTGAGGGTGTGAACTATACGGGGAAATACTCACCCACGC
CATCGACCGCAGCAATCCAGATGCTTTTGGCCACAGCAGTGGCAAAGGAC
GGTGAGCTGCGCCATTTCGACGCGGAGAATGCATTCCTGACAGCGGACAT
CGATGAGGAATTGTACATTGAGATCCCCGAGGAGTACCATAAGTTTACGG
GGGCATAA
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