prot_H-elongata_contig9639.17028.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig9639.17028.1
Unique Name	prot_H-elongata_contig9639.17028.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	397

Homology

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BLAST of mRNA_H-elongata_contig9639.17028.1 vs. uniprot
Match: D8LFI8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 2.440e-103
Identity = 189/401 (47.13%), Postives = 248/401 (61.85%), Query Frame = 0

Query:    1 GRVSVKSSRSSTNTVCQKNKRSLSGCDVILPHHIMLDVLSFLDTWAIVRARSVSRAFVSDAPGLVTALDFSSRHKFPRANQMHLFPSVTDIHLDGDVNLLQDAVVGLP-WCTSLRSLRISRYVLQPTA---LSSATVASLCAIPLYELEIRRLRLEMPAGLAMPAWRTLRRLVLRDAFIRDDSLANLVKSLPRGPLPLFALDLSRNPFGETTEGMHPFASALATFPELRSLELTVDRIAADGARLLLGALLDGACPKLGFLEMSLNFIDNDVISFLAAGLARGGHGMQNLYRLGIGGRFFADEGVTNFEPLSQSLAAGGLPLLSYLHIQGDFGPHDVGPLLRVLKRGVCPNLSVVKVERSTRFDPADDANSIEDAVQSMLELVTCFSVRRLREVHVLGMNL 397
            GR  ++SS        + NK    GCD  LPHH++L+++SFLDT +IV  R +SRAF SDAP LV  LDF    + P A  + LFP V  ++LDG+ +L+   V GL  W +SLR L +S +   P     LS      LCA+PL EL++  + +E P  L M AWRTL+RLV+RDAF+ D+SL +L KS+P G LPL  LDLSRN FG   + + PFA AL +FP+L  LEL+  RI       ++  LL+GACPKL  L++SLNF  N +++ L  GL   GHG+ NL +LG G R   DE +T FE + ++LAAGGLP L +LH+QGD GP  V P+L  L+ G CP L++VK+ERS      +D    EDA QSM  LV    +  LREVH LGM L
Sbjct:   17 GRAGLRSSPRRCAREARNNKPG--GCDADLPHHVVLEIVSFLDTRSIVSGRCLSRAFSSDAPALVKTLDFHMGQQSPSAETIKLFPEVRQVNLDGNRDLVHAVVAGLRGWGSSLR-LDVSLHDSVPQKEEPLSKTATTDLCALPLTELDMMEVVIEFPPLLPMNAWRTLQRLVIRDAFLGDESLESLSKSIPEGALPLRHLDLSRNLFGGY-DTVLPFADALRSFPDLEWLELSACRICRGSGDRIVRTLLEGACPKLRTLDLSLNFFTNGLLASLCEGLGAPGHGLLNLRKLGFGSRVTGDEMITCFEKVGKALAAGGLPKLDFLHLQGDVGPRQVSPVLSRLRGGACPMLAMVKLERSLHSTLGEDEFGAEDAAQSMFNLVISGHIPHLREVHALGMAL 413

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig9639.17028.1 vs. uniprot

BLAST of mRNA_H-elongata_contig9639.17028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LFI8_ECTSI	2.440e-103	47.13	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 51..391 e-value: 2.1E-18 score: 67.8
None	No IPR available	PANTHER	PTHR24113	FAMILY NOT NAMED	coord: 159..310
None	No IPR available	PANTHER	PTHR24113	FAMILY NOT NAMED	coord: 211..307 coord: 158..243
None	No IPR available	PANTHER	PTHR24113:SF5	RAN GTPASE-ACTIVATING PROTEIN	coord: 211..307 coord: 158..243
None	No IPR available	PANTHER	PTHR24113:SF5	RAN GTPASE-ACTIVATING PROTEIN	coord: 159..310
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 103..326
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 29..71

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig9639	contig	H-elongata_contig9639:460..1650 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig9639.17028.1	mRNA_H-elongata_contig9639.17028.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig9639 460..1650 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig9639.17028.1 ID=prot_H-elongata_contig9639.17028.1|Name=mRNA_H-elongata_contig9639.17028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=397bp
GRVSVKSSRSSTNTVCQKNKRSLSGCDVILPHHIMLDVLSFLDTWAIVRA
RSVSRAFVSDAPGLVTALDFSSRHKFPRANQMHLFPSVTDIHLDGDVNLL
QDAVVGLPWCTSLRSLRISRYVLQPTALSSATVASLCAIPLYELEIRRLR
LEMPAGLAMPAWRTLRRLVLRDAFIRDDSLANLVKSLPRGPLPLFALDLS
RNPFGETTEGMHPFASALATFPELRSLELTVDRIAADGARLLLGALLDGA
CPKLGFLEMSLNFIDNDVISFLAAGLARGGHGMQNLYRLGIGGRFFADEG
VTNFEPLSQSLAAGGLPLLSYLHIQGDFGPHDVGPLLRVLKRGVCPNLSV
VKVERSTRFDPADDANSIEDAVQSMLELVTCFSVRRLREVHVLGMNL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR036047	F-box-like_dom_sf