mRNA_H-elongata_contig9639.17028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9639.17028.1
Unique NamemRNA_H-elongata_contig9639.17028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9639.17028.1 vs. uniprot
Match: D8LFI8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 2.440e-103
Identity = 189/401 (47.13%), Postives = 248/401 (61.85%), Query Frame = 1 
Query:    1 GRVSVKSSRSSTNTVCQKNKRSLSGCDVILPHHIMLDVLSFLDTWAIVRARSVSRAFVSDAPGLVTALDFSSRHKFPRANQMHLFPSVTDIHLDGDVNLLQDAVVGLP-WCTSLRSLRISRYVLQPTA---LSSATVASLCAIPLYELEIRRLRLEMPAGLAMPAWRTLRRLVLRDAFIRDDSLANLVKSLPRGPLPLFALDLSRNPFGETTEGMHPFASALATFPELRSLELTVDRIAADGARLLLGALLDGACPKLGFLEMSLNFIDNDVISFLAAGLARGGHGMQNLYRLGIGGRFFADEGVTNFEPLSQSLAAGGLPLLSYLHIQGDFGPHDVGPLLRVLKRGVCPNLSVVKVERSTRFDPADDANSIEDAVQSMLELVTCFSVRRLREVHVLGMNL 1191
            GR  ++SS        + NK    GCD  LPHH++L+++SFLDT +IV  R +SRAF SDAP LV  LDF    + P A  + LFP V  ++LDG+ +L+   V GL  W +SLR L +S +   P     LS      LCA+PL EL++  + +E P  L M AWRTL+RLV+RDAF+ D+SL +L KS+P G LPL  LDLSRN FG   + + PFA AL +FP+L  LEL+  RI       ++  LL+GACPKL  L++SLNF  N +++ L  GL   GHG+ NL +LG G R   DE +T FE + ++LAAGGLP L +LH+QGD GP  V P+L  L+ G CP L++VK+ERS      +D    EDA QSM  LV    +  LREVH LGM L
Sbjct:   17 GRAGLRSSPRRCAREARNNKPG--GCDADLPHHVVLEIVSFLDTRSIVSGRCLSRAFSSDAPALVKTLDFHMGQQSPSAETIKLFPEVRQVNLDGNRDLVHAVVAGLRGWGSSLR-LDVSLHDSVPQKEEPLSKTATTDLCALPLTELDMMEVVIEFPPLLPMNAWRTLQRLVIRDAFLGDESLESLSKSIPEGALPLRHLDLSRNLFGGY-DTVLPFADALRSFPDLEWLELSACRICRGSGDRIVRTLLEGACPKLRTLDLSLNFFTNGLLASLCEGLGAPGHGLLNLRKLGFGSRVTGDEMITCFEKVGKALAAGGLPKLDFLHLQGDVGPRQVSPVLSRLRGGACPMLAMVKLERSLHSTLGEDEFGAEDAAQSMFNLVISGHIPHLREVHALGMAL 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9639.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFI8_ECTSI2.440e-10347.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9639contigH-elongata_contig9639:460..1650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-04_002030.1
Exons1
Model size1191
Cds size1191
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931357.3198779-CDS-H-elongata_contig9639:459..16501622931357.3198779-CDS-H-elongata_contig9639:459..1650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9639 460..1650 -
1691679803.713955-CDS-H-elongata_contig9639:459..16501691679803.713955-CDS-H-elongata_contig9639:459..1650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9639 460..1650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9639.17028.1prot_H-elongata_contig9639.17028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9639 460..1650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9639.17028.1

>prot_H-elongata_contig9639.17028.1 ID=prot_H-elongata_contig9639.17028.1|Name=mRNA_H-elongata_contig9639.17028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=397bp
GRVSVKSSRSSTNTVCQKNKRSLSGCDVILPHHIMLDVLSFLDTWAIVRA
RSVSRAFVSDAPGLVTALDFSSRHKFPRANQMHLFPSVTDIHLDGDVNLL
QDAVVGLPWCTSLRSLRISRYVLQPTALSSATVASLCAIPLYELEIRRLR
LEMPAGLAMPAWRTLRRLVLRDAFIRDDSLANLVKSLPRGPLPLFALDLS
RNPFGETTEGMHPFASALATFPELRSLELTVDRIAADGARLLLGALLDGA
CPKLGFLEMSLNFIDNDVISFLAAGLARGGHGMQNLYRLGIGGRFFADEG
VTNFEPLSQSLAAGGLPLLSYLHIQGDFGPHDVGPLLRVLKRGVCPNLSV
VKVERSTRFDPADDANSIEDAVQSMLELVTCFSVRRLREVHVLGMNL
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mRNA from alignment at H-elongata_contig9639:460..1650-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9639.17028.1 ID=mRNA_H-elongata_contig9639.17028.1|Name=mRNA_H-elongata_contig9639.17028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1191bp|location=Sequence derived from alignment at H-elongata_contig9639:460..1650- (Himanthalia elongata Himel1 dioecious)
GGACGAGTGTCAGTGAAGTCGAGTAGAAGCTCGACGAATACTGTGTGTCA
GAAAAACAAGAGGAGCCTGTCAGGATGCGACGTGATTCTCCCGCATCATA
TCATGCTGGACGTGTTGTCCTTCCTCGATACATGGGCGATCGTTCGTGCG
CGATCCGTTTCCAGGGCTTTCGTAAGCGATGCGCCGGGTCTGGTGACCGC
GCTGGACTTTAGCTCAAGGCACAAGTTCCCAAGAGCGAATCAGATGCACC
TCTTTCCGAGTGTGACGGACATCCATTTGGACGGCGACGTGAATCTGCTA
CAGGACGCCGTTGTAGGGCTCCCCTGGTGCACGTCGCTGCGCAGCTTGCG
AATTTCCCGCTACGTTTTGCAGCCCACTGCGCTTTCTAGTGCCACCGTGG
CGAGCCTCTGCGCAATCCCATTGTATGAGTTGGAGATTCGGAGACTACGG
TTGGAGATGCCCGCCGGACTGGCGATGCCCGCGTGGCGGACGCTACGGCG
CCTCGTACTGCGAGACGCGTTCATCCGTGACGACTCGTTGGCCAACCTCG
TAAAGTCACTGCCACGAGGTCCTCTACCTCTCTTTGCCTTGGATCTCTCT
CGCAATCCTTTTGGCGAGACCACTGAAGGGATGCACCCCTTCGCGTCGGC
CCTCGCGACGTTCCCGGAACTGCGCTCCCTCGAGCTAACTGTCGACCGCA
TCGCCGCCGACGGAGCAAGGCTGCTCCTGGGCGCGCTGCTTGACGGGGCG
TGCCCAAAACTCGGGTTCCTGGAGATGTCGCTTAATTTTATTGACAATGA
CGTGATCAGCTTCCTGGCGGCGGGGCTGGCCAGAGGTGGCCACGGGATGC
AGAATCTGTACCGGTTGGGCATCGGGGGTCGTTTCTTTGCGGACGAGGGC
GTGACGAACTTCGAGCCCCTCTCGCAGTCGCTCGCAGCGGGCGGCCTGCC
GCTGCTCAGCTACTTGCACATCCAGGGTGACTTCGGACCGCATGACGTAG
GGCCGCTGCTACGGGTGTTAAAGCGCGGCGTCTGTCCGAATCTCTCGGTG
GTTAAGGTAGAACGCTCAACACGGTTCGACCCGGCGGACGACGCAAACTC
AATCGAGGACGCCGTGCAGAGCATGTTGGAGCTCGTGACATGCTTCTCTG
TTCGTCGCCTGCGGGAGGTCCACGTGCTTGGTATGAATCTG
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Coding sequence (CDS) from alignment at H-elongata_contig9639:460..1650-

>mRNA_H-elongata_contig9639.17028.1 ID=mRNA_H-elongata_contig9639.17028.1|Name=mRNA_H-elongata_contig9639.17028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2382bp|location=Sequence derived from alignment at H-elongata_contig9639:460..1650- (Himanthalia elongata Himel1 dioecious)
GGACGAGTGTCAGTGAAGTCGAGTAGAAGCTCGACGAATACTGTGTGTCA
GAAAAACAAGAGGAGCCTGTCAGGATGCGACGTGATTCTCCCGCATCATA
TCATGCTGGACGTGTTGTCCTTCCTCGATACATGGGCGATCGTTCGTGCG
CGATCCGTTTCCAGGGCTTTCGTAAGCGATGCGCCGGGTCTGGTGACCGC
GCTGGACTTTAGCTCAAGGCACAAGTTCCCAAGAGCGAATCAGATGCACC
TCTTTCCGAGTGTGACGGACATCCATTTGGACGGCGACGTGAATCTGCTA
CAGGACGCCGTTGTAGGGCTCCCCTGGTGCACGTCGCTGCGCAGCTTGCG
AATTTCCCGCTACGTTTTGCAGCCCACTGCGCTTTCTAGTGCCACCGTGG
CGAGCCTCTGCGCAATCCCATTGTATGAGTTGGAGATTCGGAGACTACGG
TTGGAGATGCCCGCCGGACTGGCGATGCCCGCGTGGCGGACGCTACGGCG
CCTCGTACTGCGAGACGCGTTCATCCGTGACGACTCGTTGGCCAACCTCG
TAAAGTCACTGCCACGAGGTCCTCTACCTCTCTTTGCCTTGGATCTCTCT
CGCAATCCTTTTGGCGAGACCACTGAAGGGATGCACCCCTTCGCGTCGGC
CCTCGCGACGTTCCCGGAACTGCGCTCCCTCGAGCTAACTGTCGACCGCA
TCGCCGCCGACGGAGCAAGGCTGCTCCTGGGCGCGCTGCTTGACGGGGCG
TGCCCAAAACTCGGGTTCCTGGAGATGTCGCTTAATTTTATTGACAATGA
CGTGATCAGCTTCCTGGCGGCGGGGCTGGCCAGAGGTGGCCACGGGATGC
AGAATCTGTACCGGTTGGGCATCGGGGGTCGTTTCTTTGCGGACGAGGGC
GTGACGAACTTCGAGCCCCTCTCGCAGTCGCTCGCAGCGGGCGGCCTGCC
GCTGCTCAGCTACTTGCACATCCAGGGTGACTTCGGACCGCATGACGTAG
GGCCGCTGCTACGGGTGTTAAAGCGCGGCGTCTGTCCGAATCTCTCGGTG
GTTAAGGTAGAACGCTCAACACGGTTCGACCCGGCGGACGACGCAAACTC
AATCGAGGACGCCGTGCAGAGCATGTTGGAGCTCGTGACATGCTTCTCTG
TTCGTCGCCTGCGGGAGGTCCACGTGCTTGGTATGAATCTGGGACGAGTG
TCAGTGAAGTCGAGTAGAAGCTCGACGAATACTGTGTGTCAGAAAAACAA
GAGGAGCCTGTCAGGATGCGACGTGATTCTCCCGCATCATATCATGCTGG
ACGTGTTGTCCTTCCTCGATACATGGGCGATCGTTCGTGCGCGATCCGTT
TCCAGGGCTTTCGTAAGCGATGCGCCGGGTCTGGTGACCGCGCTGGACTT
TAGCTCAAGGCACAAGTTCCCAAGAGCGAATCAGATGCACCTCTTTCCGA
GTGTGACGGACATCCATTTGGACGGCGACGTGAATCTGCTACAGGACGCC
GTTGTAGGGCTCCCCTGGTGCACGTCGCTGCGCAGCTTGCGAATTTCCCG
CTACGTTTTGCAGCCCACTGCGCTTTCTAGTGCCACCGTGGCGAGCCTCT
GCGCAATCCCATTGTATGAGTTGGAGATTCGGAGACTACGGTTGGAGATG
CCCGCCGGACTGGCGATGCCCGCGTGGCGGACGCTACGGCGCCTCGTACT
GCGAGACGCGTTCATCCGTGACGACTCGTTGGCCAACCTCGTAAAGTCAC
TGCCACGAGGTCCTCTACCTCTCTTTGCCTTGGATCTCTCTCGCAATCCT
TTTGGCGAGACCACTGAAGGGATGCACCCCTTCGCGTCGGCCCTCGCGAC
GTTCCCGGAACTGCGCTCCCTCGAGCTAACTGTCGACCGCATCGCCGCCG
ACGGAGCAAGGCTGCTCCTGGGCGCGCTGCTTGACGGGGCGTGCCCAAAA
CTCGGGTTCCTGGAGATGTCGCTTAATTTTATTGACAATGACGTGATCAG
CTTCCTGGCGGCGGGGCTGGCCAGAGGTGGCCACGGGATGCAGAATCTGT
ACCGGTTGGGCATCGGGGGTCGTTTCTTTGCGGACGAGGGCGTGACGAAC
TTCGAGCCCCTCTCGCAGTCGCTCGCAGCGGGCGGCCTGCCGCTGCTCAG
CTACTTGCACATCCAGGGTGACTTCGGACCGCATGACGTAGGGCCGCTGC
TACGGGTGTTAAAGCGCGGCGTCTGTCCGAATCTCTCGGTGGTTAAGGTA
GAACGCTCAACACGGTTCGACCCGGCGGACGACGCAAACTCAATCGAGGA
CGCCGTGCAGAGCATGTTGGAGCTCGTGACATGCTTCTCTGTTCGTCGCC
TGCGGGAGGTCCACGTGCTTGGTATGAATCTG
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