prot_H-elongata_contig95798.16979.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95798.16979.1
Unique Nameprot_H-elongata_contig95798.16979.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length294
Homology
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI001652E070 (uncharacterized protein LOC110926009 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652E070)

HSP 1 Score: 67.8 bits (164), Expect = 3.230e-9
Identity = 62/241 (25.73%), Postives = 110/241 (45.64%), Query Frame = 0
Query:   52 WFEITFFLKVIERLFQLVRLADGTKPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKK-RLELLEDALDK---CREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTD-LRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYR 287
            W  +TF LKV+  + +++RL D  K       Y      + ++ A  T     G      +++   +DK   C+  +H P++ A +   PE+Y       I+  Q +TD +   V+R++ +              +DK   + K M+++   + G F   I      ++  A+WWN  GK  +P + Q+A +VLS+  +++G ERNWS    +   K  R+    + +LV+V  N  L  R
Sbjct:  121 WTNVTFTLKVMGPIVRVLRLVDNEKKPAMDYLY------EGMERAKITIAKALGENSVDYQVVSAIIDKRWDCQ--LHHPLHAAGYYFNPEFYYYRPE--IEKDQEVTDGMIKCVQRLVPS--------------KDKQDLIMKEMVKWVN-QEGRFALDIAKRAHCTIAPAQWWNLYGKE-VPNIQQLAMKVLSLTCSSSGCERNWSTFEQIHSKKRNRLEHKKLQDLVFVNYNKTLKNR 335          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI0010A55CE9 (uncharacterized protein LOC114752370 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A55CE9)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-7
Identity = 57/243 (23.46%), Postives = 108/243 (44.44%), Query Frame = 0
Query:   52 WFEITFFLKVIERLFQLVRLADGT-KPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSK 293
            W E    +K++  L +L+R+ D   KP +  ++  +    + +KE F+ + +L   K    +++   DK   ++   ++ AA+ L P +    +   I   +   DL  + E       S+      T   +          +   R +  +F      + A+ L   +WW+  G + +PEL QVA R+LS   +++G ERNWSL   +   +  R+    +++LV+   NL+L  R  +  K
Sbjct:  468 WNECYQVVKIVSPLMRLLRIVDSDEKPSLPYVYEGMQRAKNGIKEIFQRNKEL--YKPYTNIIQARWDK---HLKQELHAAAYMLNPAFL--YNPTFIKKNRLQKDLIDVFESF-----SNENLDFCTMMQQ----------VFIYRDRKDSFDRFSCEKAAQKLDPHQWWSFYGSS-IPELQQVAIRILSQTSSSSGCERNWSLFERIHNKRRNRLEHERLNDLVFTNYNLRLKDRNLLNKK 687          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI0010A37B05 (uncharacterized protein LOC114731662 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A37B05)

HSP 1 Score: 61.6 bits (148), Expect = 6.080e-7
Identity = 68/290 (23.45%), Postives = 125/290 (43.10%), Query Frame = 0
Query:    5 KQALVNTVVDETFTEYVTRKLTKKALRATGDEVKRSILDTDKSEDGAWFEITFFLKVIERLFQLVRLADGT-KPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSK 293
            K  L   V+D+ F ++      K A    G     ++LD     +  W E    +K++  L +L+R+ D   KP +  +F  +    + +K+ F  + +L   K    +++   D+   ++   ++ AA+ L P +    + ++I   +    L  + E       S+      T   +        V I   R  S  F      + A+ L   +WW+  G + +PEL QVA R+LS    ++G ERNWSL   +   +  R+    +++LV+   NL+L  R+ +  K
Sbjct:  491 KHDLQALVIDKHFVDH------KLARTEAGRTFSATVLD-----NRFWNECYQVVKIVSPLMRLLRIVDSDEKPSLPYVFEGMQRAKNGIKDIFHRNKEL--YKPYTRIIQARWDR---HLKQELHAAAYMLNPAFL--YNPSLIKKNRLQKHLIDVFESF-----SNENLDYCTMMQQ--------VFIYKDRKDS--FDRFSCEKAAQKLDPHQWWSFYGSS-IPELQQVAIRILSQTSTSSGCERNWSLFERIHTKRRNRLEHERLNDLVFTNYNLRLKDRDILNKK 746          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI0010A49E47 (uncharacterized protein LOC114750523 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A49E47)

HSP 1 Score: 60.1 bits (144), Expect = 1.270e-6
Identity = 58/243 (23.87%), Postives = 108/243 (44.44%), Query Frame = 0
Query:   52 WFEITFFLKVIERLFQLVRLADGT-KPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSK 293
            W E    +K++  L +L+R+ D   KP +  +F  +    + +K+ F  + +L   K    +++   D+   Y+   ++ AA+ L P +    + ++I   +    L  + E       S+      T   +        V I   R  S  F      + ++ L   +WW+  G + +PEL QVA R+LS    ++G ERNWSL   +   +  R+    +++LV+   NL+L  R+ +  K
Sbjct:   44 WNECYQVVKIVSPLMRLLRIVDSDEKPSLPYVFEGMQRAKNGIKDIFHRNKEL--YKPYTRIIQARWDR---YLKQKLHAAAYMLNPAFL--YNPSLIKKNRLQKHLIDVFESF-----SNENLDYCTMMQQ--------VFIYKDRKDS--FDRFSCEKASQKLDHHQWWSFYGSS-IPELQQVAIRILSQTSTSSGCERNWSLFERIHTKRRNRLEHERLNDLVFTNYNLRLKDRDILNKK 263          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI00165300D7 (uncharacterized protein LOC110876300 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI00165300D7)

HSP 1 Score: 58.2 bits (139), Expect = 6.890e-6
Identity = 57/241 (23.65%), Postives = 108/241 (44.81%), Query Frame = 0
Query:   52 WFEITFFLKVIERLFQLVRLADGTK-PQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDK---CREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTD-LRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYR 287
            W  +TF LKV+  + +++ L D  K P++  L+  +      + +A      L       +++   +DK   C+  +H P++ A +   P++Y       I+  Q +TD +   V+R++ +              +DK   + K M++ A                 ++  A+WW+  GK  +P + Q+A +VLS+   ++G ERNWS    +   K  R+    + +LV+V+ N  L  R
Sbjct:  217 WTNVTFTLKVMGPIVRVLCLVDNEKKPEIGYLYEGMERAKITIAKA------LGENNVDYQVVSAIIDKRWDCQ--LHHPLHAAGYYFNPKFYCYRPE--IEKDQEVTDGMIKCVQRLVPS--------------KDKQDLIMKEMVKRAHC---------------TIAPAQWWSLYGKE-VPNIQQLAMKVLSLTCCSSGCERNWSTFEQIHSKKRNRLEYKKLQDLVFVKYNKTLKNR 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001652E0703.230e-925.73uncharacterized protein LOC110926009 n=1 Tax=Helia... [more]
UPI0010A55CE91.390e-723.46uncharacterized protein LOC114752370 n=1 Tax=Proso... [more]
UPI0010A37B056.080e-723.45uncharacterized protein LOC114731662 n=1 Tax=Proso... [more]
UPI0010A49E471.270e-623.87uncharacterized protein LOC114750523 n=1 Tax=Proso... [more]
UPI00165300D76.890e-623.65uncharacterized protein LOC110876300 n=1 Tax=Helia... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 49..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95798contigH-elongata_contig95798:1430..2311 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95798.16979.1mRNA_H-elongata_contig95798.16979.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95798 1430..2311 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95798.16979.1 ID=prot_H-elongata_contig95798.16979.1|Name=mRNA_H-elongata_contig95798.16979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
VTKCKQALVNTVVDETFTEYVTRKLTKKALRATGDEVKRSILDTDKSEDG
AWFEITFFLKVIERLFQLVRLADGTKPQVAQLFYRLHNVLDDLKEAFRTD
PDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDD
GQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKS
GNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYE
RNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSKN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf