prot_H-elongata_contig95014.16913.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig95014.16913.1
Unique Nameprot_H-elongata_contig95014.16913.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length140
Homology
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 5.490e-64
Identity = 114/144 (79.17%), Postives = 120/144 (83.33%), Query Frame = 0
Query:    1 NFQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLT--------EVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            NFQ FDLDD D AFARFKTLK+SQHLTFSGRGAG+TITPYAAGRMIGA+VWRVSWQTEDNDIVYATAYN+  ERHLR SAL TLTRPSVLITDAHN+LT            RK RE  LISTVMDTVRGGGNVL+PTDTAG  L
Sbjct:  236 NFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVL 379          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.370e-44
Identity = 84/138 (60.87%), Postives = 100/138 (72.46%), Query Frame = 0
Query:    2 FQDFDLDDADGAFARFKTLKYSQHLTFS--GRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLT-EVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            F+ F LDDAD AF RF+ LKYSQHL FS  GRGAG+TITPYAAG +IG S+WR+ WQT+DNDIVYA +YNH+ E HL   A+ TL+RPS++ITDAH  LT +    + R   L   V  TVR GGNVL+P DTAG  L
Sbjct:  161 FKAFTLDDADAAFERFQPLKYSQHLRFSEGGRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVETLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVL 298          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA)

HSP 1 Score: 148 bits (374), Expect = 8.190e-39
Identity = 77/139 (55.40%), Postives = 99/139 (71.22%), Query Frame = 0
Query:    3 QDFD---LDDADGAF--ARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            +DFD   LDD D AF   RF+ LKYSQH+  +GRGAGI +TPY  G MIG +VW+++ +TE+  I+YA  YNHK ERHL P+ L TL RP++LITDA N L+   SR+ R+  L+ T M T++G GNVL+PTDTAG  L
Sbjct:   71 EDFDVWNLDDVDAAFNEERFEQLKYSQHVRLTGRGAGIELTPYVGGHMIGGTVWKITKETEE--ILYAVDYNHKKERHLNPTVLETLNRPTLLITDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVL 207          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A6B2L931_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L931_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 2.570e-38
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 0
Query:    2 FQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            F  F+LDD D AF  F  LKYSQ  T SG+G  + ITPYAAG +IG ++W++  +T++  I+YA  YNHK ERHL P+ L TLT+P++LITDA N+L    SR  R+  LI ++  T+R GGNVL+P DTAG  L
Sbjct:  111 FTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNSQDSRGNRDSLLIESITSTLRAGGNVLLPVDTAGRVL 243          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: B3S6C6_TRIAD (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Trichoplax TaxID=10227 RepID=B3S6C6_TRIAD)

HSP 1 Score: 144 bits (364), Expect = 1.670e-37
Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = 0
Query:    1 NFQDFDL---DDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            +++DFDL   DD D AF+R   LKYSQH+  +G+G G+TITPYAAG M+G ++W++    E+ DI+YA  YNHK ERHL  S L TLT PS+LITDA+N+      R+ R+ +LIS V++ +R GGNVL+  DTAG  L
Sbjct:  107 DYEDFDLFSLDDIDDAFSRITALKYSQHVHLTGKGNGLTITPYAAGHMVGGTIWKIIKDGEE-DIIYAVDYNHKKERHLNGSVLETLTHPSLLITDAYNAQYNQAKRRDRDQKLISRVLNALRSGGNVLIAVDTAGRVL 244          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A6B2KYM6_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYM6_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 2.110e-36
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 0
Query:    2 FQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            F  F+LDD D AF  F  LKYSQ  T SG+G  + ITPYAAG +IG ++W++  +T++  I+YA  YNHK ERHL P+ L TLT+P++LITDA N+L    SR  R+  LI ++  T+R GGNVL+P DTAG  L
Sbjct:  111 FTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNSQDSRGNRDSLLIESITSTLRAGGNVLLPVDTAGRVL 243          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO)

HSP 1 Score: 140 bits (354), Expect = 3.780e-36
Identity = 67/131 (51.15%), Postives = 93/131 (70.99%), Query Frame = 0
Query:    2 FQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTA 132
            ++ F+L+D D AF  F  ++Y+Q +  +G+G GITITP+ AG  +G + WR++ + ED  I+YA  YNH+ ERHL  +AL T  RP+VLITDA+N LTE  SRK R+  L++ VM T+R GGNVL+P DTA
Sbjct:  122 YETFNLNDVDRAFGMFNPMRYAQQINLTGKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALHTFNRPAVLITDAYNGLTEQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTA 250          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A7D9DXS7_PARCT (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A7D9DXS7_PARCT)

HSP 1 Score: 140 bits (352), Expect = 7.430e-36
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = 0
Query:    1 NFQDFDL---DDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            N++DF+L   DD D AF +   LKYSQH++  G+G G+TITPYAAG MIG ++W++    E+ DI+YA  YNHK ERHL  + L TL+RPS+LITD++N L     R+ R+ +L+S ++ T R GGNVL+  DTAG  L
Sbjct:  107 NYEDFELFSLDDVDAAFDKIIQLKYSQHVSLKGKGHGLTITPYAAGHMIGGTMWKIVKDGEE-DIIYAVDYNHKKERHLNGAVLETLSRPSLLITDSYNVLNMQARRRDRDTQLMSQILKTTRRGGNVLLTVDTAGRIL 244          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: UPI001F043033 (cleavage and polyadenylation specificity factor subunit 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043033)

HSP 1 Score: 139 bits (351), Expect = 1.020e-35
Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 0
Query:    1 NFQDFDL---DDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            N++DF+L   DD D AF     LKYSQH+   G+G G+TITPYAAG MIG ++W++    E+ DIVYA  YNHK ERHL  + L TL+RPS+LITD++N L     R+ R+ +L+S ++ T R GGNVL+  DTAG  L
Sbjct:  107 NYEDFELFSLDDVDAAFENIVQLKYSQHVNLKGKGHGLTITPYAAGHMIGGTMWKIVKDGEE-DIVYAVDYNHKKERHLNGAVLETLSRPSLLITDSYNVLNMQARRRDRDTQLMSQILKTTRRGGNVLLAIDTAGRVL 244          
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A2R6XNT6_MARPO (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XNT6_MARPO)

HSP 1 Score: 139 bits (349), Expect = 1.880e-35
Identity = 68/136 (50.00%), Postives = 91/136 (66.91%), Query Frame = 0
Query:    1 NFQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 136
            NF  F+LDD D AF     LKYSQH    G+G GITITPYAAGR++G +VW+++  TED  I+YA  +NH+ ERHL  + L +  RP+VLITD++N+L     +K R+   +  VM  +R GGNVL+P +TAG  L
Sbjct:  127 NFDLFNLDDVDTAFGNSVQLKYSQHHLLQGKGEGITITPYAAGRLLGGTVWKITVDTED--IIYAVDFNHRKERHLNGTVLQSFVRPAVLITDSYNALNNQPLQKQRDAEFLDVVMKALRAGGNVLLPVETAGRVL 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI5.490e-6479.17Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA4.370e-4460.87Cleavage and polyadenylation specificity factor su... [more]
L8GYA6_ACACA8.190e-3955.40Cleavage and polyadenylation specificity factor su... [more]
A0A6B2L931_9EUKA2.570e-3852.59Cleavage and polyadenylation specificity factor su... [more]
B3S6C6_TRIAD1.670e-3752.52Cleavage and polyadenylation specificity factor su... [more]
A0A6B2KYM6_9EUKA2.110e-3652.59Cleavage and polyadenylation specificity factor su... [more]
A0A6U9RRA8_9CHLO3.780e-3651.15Cleavage and polyadenylation specificity factor su... [more]
A0A7D9DXS7_PARCT7.430e-3651.08Cleavage and polyadenylation specificity factor su... [more]
UPI001F0430331.020e-3551.80cleavage and polyadenylation specificity factor su... [more]
A0A2R6XNT6_MARPO1.880e-3550.00Cleavage and polyadenylation specificity factor su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeGENE3D3.60.15.10coord: 1..137
e-value: 2.2E-34
score: 120.5
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeSUPERFAMILY56281Metallo-hydrolase/oxidoreductasecoord: 4..133
IPR001279Metallo-beta-lactamasePFAMPF16661Lactamase_B_6coord: 3..89
e-value: 3.3E-25
score: 88.7
IPR027075Cleavage and polyadenylation specificity factor subunit 2PANTHERPTHR45922FAMILY NOT NAMEDcoord: 1..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95014contigH-elongata_contig95014:32..1757 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95014.16913.1mRNA_H-elongata_contig95014.16913.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig95014 32..1757 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig95014.16913.1 ID=prot_H-elongata_contig95014.16913.1|Name=mRNA_H-elongata_contig95014.16913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
NFQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASV
WRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTE
VMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESLSSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036866RibonucZ/Hydroxyglut_hydro
IPR001279Metallo-B-lactamas
IPR027075CPSF2