prot_H-elongata_contig94575.16879.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig94575.16879.1
Unique Name	prot_H-elongata_contig94575.16879.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	143

Homology

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.360e-73
Identity = 114/141 (80.85%), Postives = 126/141 (89.36%), Query Frame = 0

Query:    2 ISGSDRQNPKYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDKVRLIY 142
            I GSD QNP+Y+VN+A MVQYIR  LVKCT RDRYGKETARIMEILLQNK+L+QQQ+GEMAM+PP DAR RLYRL+RDRMVS+QEVPKRADRNPN TF+LWTIKHDQ V QVV +SLYKAMLNMRLRRKFVYSNDK   I+
Sbjct:  143 IPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQ-VAQVVLESLYKAMLNMRLRRKFVYSNDKALFIH 282

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 107 bits (266), Expect = 3.440e-24
Identity = 50/127 (39.37%), Postives = 85/127 (66.93%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++  +V++++   V   ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D++V +QE+PKRAD NP  TFF W++   Q   ++ T+ +  ++  +R RRKF    +K
Sbjct:  471 QYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRI-TERVQDSLCRLRRRRKFEAEENK 596

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 105 bits (263), Expect = 8.940e-24
Identity = 50/127 (39.37%), Postives = 84/127 (66.14%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q   +V T+ +  ++  +R RRKF    +K
Sbjct:  499 QYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARV-TERVQDSLCRLRRRRKFEAEENK 624

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 105 bits (262), Expect = 1.140e-23
Identity = 49/127 (38.58%), Postives = 84/127 (66.14%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q   ++ T+ +  ++  +R RRKF    +K
Sbjct:  430 QYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARI-TERVQDSLCRLRRRRKFEAEENK 555

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 1.150e-23
Identity = 48/127 (37.80%), Postives = 84/127 (66.14%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++  +V++++    +  ++D+YG  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q   ++  + +  ++  +R RRKF    +K
Sbjct:  437 QYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIA-ERVQDSLCRLRRRRKFEAEENK 562

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC)

HSP 1 Score: 102 bits (253), Expect = 1.970e-22
Identity = 48/127 (37.80%), Postives = 84/127 (66.14%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++  +V++++       ++DR+G  +ARI+ +L++ + LEQ+ IGE+A+LP  +AR RLY L  D++V MQE+PKRAD NP  TFF W++   Q ++  +T+ +  ++  +R RR F    +K
Sbjct:  476 QYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQ-MHVRITERVQGSLCRLRRRRTFEAEENK 601

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.980e-22
Identity = 47/127 (37.01%), Postives = 83/127 (65.35%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++  +V++++       ++D++G  +ARI+ +L++ + LEQ+ IGE+A+LP  DAR RLY L  +++V MQE+PKRAD NP  TFF W++       ++ T+ +  ++  +R RRKF    +K
Sbjct:  481 QYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRI-TERVQDSLCRLRRRRKFEAEENK 606

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.110e-22
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 0

Query:   12 YMVNIASMVQYIRSKLVKCTVRDRY--------GKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRK 130
            Y V +  +++ +R + +   +R+RY        G   ARI  +LL  K+L+ QQ+ E+AM+   + R RLYR+  D ++++QE+P+RAD +PN TF+LWT    QQV + +T  +YK  LN+RLRR+
Sbjct:  515 YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNM-QQVVEELTQRMYKGALNLRLRRQ 640

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A024GFJ4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.270e-21
Identity = 42/127 (33.07%), Postives = 86/127 (67.72%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++ ++  Y++   +   ++D++G ++ARI+ ++L+ + LEQ+ IGE+A+LP  +AR RLY L RD+++ +QE+PKR+D NP  T + W++ +   + +V+ + +  ++  +R RR F+   +K
Sbjct:  477 QYVVHMKNITDYLKQATMHAYIQDKFGVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSV-NTFHIERVIRERVQDSICKLRSRRDFIAKENK 602

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BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.350e-21
Identity = 48/127 (37.80%), Postives = 81/127 (63.78%), Query Frame = 0

Query:   11 KYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQNKFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDK 137
            +Y+V++  +V+++R       V+D++G  +ARI+ +L++ + LEQ+ IGE+A+LP  D R RLY L  +++V MQEVPKRAD NP  TFF W++   +   +V  + +  ++  +R RRK     +K
Sbjct:  482 QYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVRLLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVA-ERIQDSVCRLRRRRKAEADENK 607

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot

BLAST of mRNA_H-elongata_contig94575.16879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FMS6_ECTSI	2.360e-73	80.85	DNA-directed RNA polymerase III subunit RPC3 n=1 T...	[more]
A0A0P1AWK6_PLAHL	3.440e-24	39.37	DNA-directed RNA polymerase III subunit RPC3 n=1 T...	[more]
A0A0W8C9C8_PHYNI	8.940e-24	39.37	DNA-directed RNA polymerase III subunit RPC3 n=12 ...	[more]
G4Z0C0_PHYSP	1.140e-23	38.58	DNA-directed RNA polymerase III subunit RPC3 (Frag...	[more]
H3GD40_PHYRM	1.150e-23	37.80	DNA-directed RNA polymerase III subunit RPC3 n=1 T...	[more]
A0A484E8N6_BRELC	1.970e-22	37.80	DNA-directed RNA polymerase III subunit RPC3 n=1 T...	[more]
A0A3R7FY14_9STRA	1.980e-22	37.01	DNA-directed RNA polymerase III subunit RPC3 n=3 T...	[more]
W7U6Z3_9STRA	5.110e-22	39.37	DNA-directed RNA polymerase III subunit RPC3 n=2 T...	[more]
A0A024GFJ4_9STRA	1.270e-21	33.07	DNA-directed RNA polymerase III subunit RPC3 n=2 T...	[more]
A0A662YGR9_9STRA	2.350e-21	37.80	DNA-directed RNA polymerase III subunit RPC3 (Frag...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 17..105 e-value: 7.2E-29 score: 101.5
IPR024550	TFIIEalpha/SarR/Rpc3 HTH domain	PFAM	PF02002	TFIIE_alpha	coord: 27..120 e-value: 1.6E-6 score: 27.9
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 9..134
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 23..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig94575	contig	H-elongata_contig94575:967..2275 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig94575.16879.1	mRNA_H-elongata_contig94575.16879.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig94575 967..2275 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig94575.16879.1 ID=prot_H-elongata_contig94575.16879.1|Name=mRNA_H-elongata_contig94575.16879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
QISGSDRQNPKYMVNIASMVQYIRSKLVKCTVRDRYGKETARIMEILLQN
KFLEQQQIGEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFF
LWTIKHDQQVNQVVTDSLYKAMLNMRLRRKFVYSNDKVRLIY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR024550	TFIIEa/SarR/Rpc3_HTH_dom
IPR039748	RPC3
IPR036390	WH_DNA-bd_sf