prot_H-elongata_contig94031.16836.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig94031.16836.1
Unique Nameprot_H-elongata_contig94031.16836.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length159
Homology
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BLAST of mRNA_H-elongata_contig94031.16836.1 vs. uniprot
Match: A0A6H5L4D5_9PHAE (PFU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4D5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-17
Identity = 55/100 (55.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:   74 GFVPDSGTPPLVDVATGSADHAVRVFTPDPERALRGDSLKEAEEAAAGRVEEYKCSGRVSEV--------------SSLPSVSEMGVMVGEEDGQLSAFA 159
            G + D G+  + DVATGSADHAVRVFTPD ER LRGD LKEA EA  G      C G  + V               +LPS SEM VMVG EDGQLSAFA
Sbjct:  405 GGISDEGS--VADVATGSADHAVRVFTPDSERFLRGDRLKEALEAVGGGSSSDACGGDAAAVPGSGALFGGRSGGGENLPSTSEMSVMVGAEDGQLSAFA 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94031.16836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4D5_9PHAE1.710e-1755.00PFU domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..159
e-value: 2.6E-8
score: 34.8
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94031contigH-elongata_contig94031:58..1064 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94031.16836.1mRNA_H-elongata_contig94031.16836.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig94031 58..1064 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig94031.16836.1 ID=prot_H-elongata_contig94031.16836.1|Name=mRNA_H-elongata_contig94031.16836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MTNQEFRSLTDHESGIRDLCKVEGGSPRYAAGSSKCLLPVAFCSASNDGT
VRAWSANGDCQGVFVIPGGCGVTGFVPDSGTPPLVDVATGSADHAVRVFT
PDPERALRGDSLKEAEEAAAGRVEEYKCSGRVSEVSSLPSVSEMGVMVGE
EDGQLSAFA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf