prot_H-elongata_contig93703.16804.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig93703.16804.1
Unique Name	prot_H-elongata_contig93703.16804.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	202

Homology

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.430e-78
Identity = 136/197 (69.04%), Postives = 146/197 (74.11%), Query Frame = 0

Query:   16 CQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFG----------GDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            C EC+EHTL+E D VLTCLECGYT C SPP RH+LRHCLTQPG  HCFA SR RAEIFC  CCDYVYDVEFD AVSR DD F L    D+  G          GD  VRGRRRRRA  DG Y +          ER+ PPPVLLSPAR RLVAAGVRGMFNLGNTCFM+SVLQAVLHISVMQSFFS KGHEP++CE+
Sbjct:   13 CHECDEHTLHEPDDVLTCLECGYTACGSPPRRHMLRHCLTQPGDGHCFAASRERAEIFCARCCDYVYDVEFDTAVSRVDDSFGLHTEWDNGGGWGAGGGSARDGDACVRGRRRRRARGDGFYRV----------ERASPPPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFSEKGHEPSRCEK 199

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A804M9E5_MAIZE (Ubiquitinyl hydrolase 1 n=2 Tax=Zea mays TaxID=4577 RepID=A0A804M9E5_MAIZE)

HSP 1 Score: 86.3 bits (212), Expect = 3.020e-16
Identity = 66/198 (33.33%), Postives = 83/198 (41.92%), Query Frame = 0

Query:   14 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPP----VLLSPARGRLVA-----AGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            P+C  C   + +    +  CL C    C S    H   H     G  H  AV   RAE+FC  C D VYD +FD AV  A     LP               R+RRR      Y             R+W P      L++ A     A     AG+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCSAASPSPTSRLYACLSCAAVFCPS----HAATHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPSTSXXXXXXXXXPALRKRRRV----DY-------------RAWAPDPAEFALMTSADPTTSASASAPAGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 224

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A1D6DW87_MAIZE (Ubiquitinyl hydrolase 1 n=12 Tax=Panicoideae TaxID=147369 RepID=A0A1D6DW87_MAIZE)

HSP 1 Score: 86.3 bits (212), Expect = 3.800e-16
Identity = 66/198 (33.33%), Postives = 83/198 (41.92%), Query Frame = 0

Query:   14 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPP----VLLSPARGRLVA-----AGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            P+C  C   + +    +  CL C    C S    H   H     G  H  AV   RAE+FC  C D VYD +FD AV  A     LP               R+RRR      Y             R+W P      L++ A     A     AG+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCSAASPSPTSRLYACLSCAAVFCPS----HAATHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPSTSXXXXXXXXXPALRKRRRV----DY-------------RAWAPDPAEFALMTSADPTTSASASAPAGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 224

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: I1J2K3_BRADI (Ubiquitinyl hydrolase 1 n=4 Tax=Pooideae TaxID=147368 RepID=I1J2K3_BRADI)

HSP 1 Score: 85.9 bits (211), Expect = 5.170e-16
Identity = 66/193 (34.20%), Postives = 79/193 (40.93%), Query Frame = 0

Query:   14 PKCQECEEHTLNELDS--VLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAA--GVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            P+C  C   T        +  CL C    C S    H   H  T P   H  AV   RAE+FC  C D VYD +FD AV  A      P    S      R R R   RA           +   P            + AR    AA  G+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCASSTSPSPSPPRLYACLSCAAVFCAS----HAASHAATPPSPGHQIAVDVDRAELFCAACGDQVYDSDFDHAVVLAQSSTLCPASTSSASAPSPRKRRRVDYRA-----------WAPDPAESALMSSADPATSARAAAAAAPPGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 225

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A5B7CAR0_DAVIN (Ubiquitinyl hydrolase 1 n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7CAR0_DAVIN)

HSP 1 Score: 85.1 bits (209), Expect = 9.520e-16
Identity = 67/193 (34.72%), Postives = 91/193 (47.15%), Query Frame = 0

Query:   14 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPN-RHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDE-RVRGRRRRRAGRDGHYVLTDRFGQQ--PGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            P+C  C  +       +  CL C    C S P+  H L H  TQ    H  AV   RAE++C  C D VYD +FD AV  +     LP   + V GG E R+  R+R   G D    L  ++G++   GR+RS                 G+RG+ NLGNTCFM SVLQ +LH   ++++F    H    C +
Sbjct:   54 PRCNFCSGYQ----GRLYICLICSSVSCCSSPDSNHALLH--TQSQNDHEIAVDIERAELYCTVCSDQVYDPDFDKAV-MSKHIMGLPKTENGVVGGGELRLSKRKRLGFGVD----LDSKYGKRLVSGRDRS----------SKSCFPLGLRGLNNLGNTCFMNSVLQVLLHAPPLRNYFLSDRHNHETCRK 225

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A1Y1I2S8_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2S8_KLENI)

HSP 1 Score: 84.3 bits (207), Expect = 1.880e-15
Identity = 61/196 (31.12%), Postives = 86/196 (43.88%), Query Frame = 0

Query:   17 QECEEH-TLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGR----DGHYVLTDRFGQQPGRERSWPPPVL-----LSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            Q CE       L  + +CL CG  GC  P  +H   H L   GG H  AV   R  +FC  C D VYD EFDA V                   D   R +     GR      ++    +  ++  +++ W    +     ++P       AG+RG+ NLGNTCFM SVLQA+LH   ++++F    H  A C++
Sbjct:   52 QRCEHPGCCTGLGRLYSCLACGGVGCWGPKEQHAREHALQ--GGGHEIAVDVQRKVLFCGACGDVVYDPEFDAVVREG-------------LAADVSYREKLESNQGRYDLPAANFPRPIKRRKKMAKQKDWDGGAIAGERPITPELRNGFPAGLRGLNNLGNTCFMNSVLQALLHTPPLRNYFLNDRHNRAVCQK 232

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A835D6W4_9MAGN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D6W4_9MAGN)

HSP 1 Score: 84.0 bits (206), Expect = 2.380e-15
Identity = 64/190 (33.68%), Postives = 89/190 (46.84%), Query Frame = 0

Query:   14 PKCQECEEHTLNELDSVLTCLECGYTGCV-SPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            P+C  C  +       +  CL C    C  SP + H L H  T+ G  H  AV   RAE+FC  CCD VYD +FD AV  +    E+P   + V    E+   RR+  +  +    L  R G+  G +  +P               G+RG+ NLGNTCFM SVLQA+LH   ++++F    H    C +
Sbjct:   54 PRCNFCSGYQ----GRLYFCLICSSVSCCCSPDSNHALLHSQTENG--HEIAVDMERAELFCCVCCDQVYDPDFDEAV-MSKQIMEMPRNNNGVDVRKEKSNKRRKLISDSNNSKELFLRMGR--GSKSCFP--------------WGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLSNQHNREICRK 220

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A2G9H309_9LAMI (Ubiquitinyl hydrolase 1 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H309_9LAMI)

HSP 1 Score: 84.0 bits (206), Expect = 2.390e-15
Identity = 65/190 (34.21%), Postives = 88/190 (46.32%), Query Frame = 0

Query:   14 PKCQECEEHTLNELDSVLTCLECG-YTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDE-RVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRL-VAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKC 200
            P+C  C  +          CL C   T C++P + H L H  ++  G H  AV   RAE++C  CCD VYD EFD AV        LP   + + GG + R+  R+R   G D       R              VL    R +  +  G+RG+ NLGNTCFM SVLQA+LH   ++++F    H    C
Sbjct:   54 PRCSFCSGY----YGRFFMCLICSSVTCCITPESNHTLLH--SESVGGHQIAVDMERAELYCCVCCDQVYDPEFDKAV-MGKHLMVLPRSGNGLVGGGQMRLSKRKRLDFGCDLDSKSVKRM-------------VLRRKQRSKSSLPVGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLNDMHNHESC 223

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: UPI0019D54133 (ubiquitin C-terminal hydrolase 22-like isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D54133)

HSP 1 Score: 82.4 bits (202), Expect = 3.890e-15
Identity = 61/189 (32.28%), Postives = 76/189 (40.21%), Query Frame = 0

Query:   14 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            P+C  C   + ++   +  CL C    C S    H   H     G  H  AV   RAE+FC  C D VYD +FD AV  A     LP    +          R   RA               P    S   P            AG+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCAAASPSQSPRLYACLSCAAVFCPS----HAASHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPSTSSTXXXXXXXXXRRVDYRAWAPDPAEFALMSSADPTTSASAAAP------------AGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 220

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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A1U8K0W4_GOSHI (Ubiquitin carboxyl-terminal hydrolase n=37 Tax=Gossypium TaxID=3633 RepID=A0A1U8K0W4_GOSHI)

HSP 1 Score: 83.2 bits (204), Expect = 4.500e-15
Identity = 77/219 (35.16%), Postives = 104/219 (47.49%), Query Frame = 0

Query:    1 PGQQTNTIRVPGK-PKCQECEEHTLNELDSVLTCLECGYTGCVSPP-NRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRAD--------DDFELPDFRDSVFGGD-ERVRGRRRRRAGRDGHYVLTDR-FGQQPGRERSWPPPVLLSPARGRLVAA-----GVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 202
            PG +    R P + P+C  CEE + + L     C+ C    C +P  + H   H L+ PG  H  AV   RAE+FC  C D VYD +FDAAV  A                 + SV G   E +R RRR      G Y   +   G+   R     P  LL  A   LV++     G+RG+ NLGNTCFM S+LQA+LH   ++++F G  H    C++
Sbjct:   41 PGGRAAIRREPTEVPRCGTCEESSRSRL---YACVACAAVFCHAPLLHSHASDHSLSIPG--HEIAVDVDRAELFCCACGDQVYDRDFDAAVVLAQTVNATATTSTSGSTAMQCSVAGSQPENLRKRRR------GDYRPWEPDSGEHISRGNQSIP--LLDAANASLVSSTQQPWGLRGLNNLGNTCFMNSILQALLHTPPLRNYFLGDRHNRYYCQQ 246

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot

BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FIM1_ECTSI	4.430e-78	69.04	Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A804M9E5_MAIZE	3.020e-16	33.33	Ubiquitinyl hydrolase 1 n=2 Tax=Zea mays TaxID=457...	[more]
A0A1D6DW87_MAIZE	3.800e-16	33.33	Ubiquitinyl hydrolase 1 n=12 Tax=Panicoideae TaxID...	[more]
I1J2K3_BRADI	5.170e-16	34.20	Ubiquitinyl hydrolase 1 n=4 Tax=Pooideae TaxID=147...	[more]
A0A5B7CAR0_DAVIN	9.520e-16	34.72	Ubiquitinyl hydrolase 1 n=1 Tax=Davidia involucrat...	[more]
A0A1Y1I2S8_KLENI	1.880e-15	31.12	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Kleb...	[more]
A0A835D6W4_9MAGN	2.380e-15	33.68	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetr...	[more]
A0A2G9H309_9LAMI	2.390e-15	34.21	Ubiquitinyl hydrolase 1 n=1 Tax=Handroanthus impet...	[more]
UPI0019D54133	3.890e-15	32.28	ubiquitin C-terminal hydrolase 22-like isoform X2 ...	[more]
A0A1U8K0W4_GOSHI	4.500e-15	35.16	Ubiquitin carboxyl-terminal hydrolase n=37 Tax=Gos...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 16..85 e-value: 4.0E-9 score: 36.7
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 14..83 score: 12.538
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 163..192 e-value: 5.0E-6 score: 26.2
None	No IPR available	GENE3D	3.90.70.10		coord: 155..201 e-value: 2.6E-8 score: 35.3
None	No IPR available	PANTHER	PTHR21646	FAMILY NOT NAMED	coord: 14..196
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 8..87
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 2..97 e-value: 1.5E-14 score: 55.9
IPR037798	Ubiquitin carboxyl-terminal hydrolase 8	PANTHER	PTHR21646:SF33	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22	coord: 14..196
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00972	USP_1	coord: 163..178
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 157..195

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig93703	contig	H-elongata_contig93703:1134..2000 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig93703.16804.1	mRNA_H-elongata_contig93703.16804.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig93703 1134..2000 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig93703.16804.1 ID=prot_H-elongata_contig93703.16804.1|Name=mRNA_H-elongata_contig93703.16804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
PGQQTNTIRVPGKPKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLL
RHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELP
DFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLS
PARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKC
ER

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001607	Znf_UBP
IPR001394	Peptidase_C19_UCH
IPR013083	Znf_RING/FYVE/PHD
IPR037798	UBP8
IPR018200	USP_CS
IPR038765	Papain-like_cys_pep_sf