prot_H-elongata_contig93149.16767.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig93149.16767.1
Unique Nameprot_H-elongata_contig93149.16767.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length119
Homology
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BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Match: D7G5A4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A4_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.870e-48
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 0 
Query:    1 PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFNDVGKHREALQFYKLASTREPRKLGHHREVARIAGILGDHESRLEALKLLARLQPTNLNVAIDRARCLLDL 119
            PPEIQ ALGRA MLYV+G V +A+T LS+VV+QCSSIPEPYALLA+I+ D GKH EAL FYKLA  R+ +  G+H+EVARIAGILGDH SRLEALK+LARL+P +LNVAI+RARCLL+L
Sbjct:   86 PPEIQAALGRARMLYVKGKVVEASTELSEVVIQCSSIPEPYALLAMIYQDGGKHEEALMFYKLACARDTKNWGNHQEVARIAGILGDHTSRLEALKVLARLRPNDLNVAIERARCLLEL 204
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BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Match: A0A7S3U166_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3U166_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 1.440e-7
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0 
Query:    1 PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFNDVGKHREALQFYKLAS 65
            PPE+QR LG A MLY   +   A  +L +VV  C  +P PY  L LI+ + G  ++ALQ Y +A+
Sbjct:   27 PPEVQRQLGEATMLYAYRDFQKAMAMLLEVVRLCPRLPHPYETLGLIYEEEGHKKKALQLYLMAA 91
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BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Match: R1B500_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B500_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 2.570e-7
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0 
Query:    1 PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFNDVGKHREALQFYKLAS 65
            PPE+QR LG A MLY   +   A  +L +VV  C  +P PY  L LI+ + G  ++ALQ Y +A+
Sbjct:    6 PPEVQRQLGEATMLYAYRDFQKAMAMLLEVVRLCPRLPHPYETLGLIYEEEGHKKKALQLYLMAA 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93149.16767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5A4_ECTSI2.870e-4873.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3U166_EMIHU1.440e-743.08Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
R1B500_EMIHU2.570e-743.08Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..119
e-value: 1.1E-10
score: 43.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..118
IPR039340Transcription factor Tfc4/TFIIIC-102/Sfc4PANTHERPTHR23082TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATEDcoord: 1..116
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..105
score: 9.328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93149contigH-elongata_contig93149:1341..2269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93149.16767.1mRNA_H-elongata_contig93149.16767.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig93149 1341..2269 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig93149.16767.1 ID=prot_H-elongata_contig93149.16767.1|Name=mRNA_H-elongata_contig93149.16767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
PPEIQRALGRAHMLYVEGNVTDAATILSDVVVQCSSIPEPYALLALIFND
VGKHREALQFYKLASTREPRKLGHHREVARIAGILGDHESRLEALKLLAR
LQPTNLNVAIDRARCLLDL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR039340Tfc4/TFIIIC-102/Sfc4
IPR013026TPR-contain_dom