prot_H-elongata_contig93044.16754.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig93044.16754.1
Unique Name	prot_H-elongata_contig93044.16754.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	172

Homology

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.190e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:   76 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 210

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.360e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  343 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 477

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.370e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  822 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 956

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.400e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  529 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 663

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-16
Identity = 54/139 (38.85%), Postives = 71/139 (51.08%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  RP      PF    Y +  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  426 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLFPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 560

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.920e-16
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFR 139
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R
Sbjct:  190 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHR 308

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-16
Identity = 53/139 (38.13%), Postives = 73/139 (52.52%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNR-QAVTW 156
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R   +T  + + + + VTW
Sbjct:  410 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRARTIQKTRDVTW 544

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.410e-16
Identity = 53/138 (38.41%), Postives = 69/138 (50.00%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  288 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 422

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.510e-16
Identity = 52/138 (37.68%), Postives = 69/138 (50.00%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +PQYNGV ER LGL+    +A       L   V   K+DRLW EAM +AC+  N    S+     SPYE+W+G   +     PF    Y R  +P  KL P+G +C  +G + + PRD  R      G I   + VTW
Sbjct:   76 SPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRVL-TRVGTIQETRNVTW 210

[Close]

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.580e-16
Identity = 53/139 (38.13%), Postives = 71/139 (51.08%), Query Frame = 0

Query:   26 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 156
            +P++NGV ER LGL+ +  +A       L   V   K+DRLW EAM +AC+  N    S+     SPYE+WYG  RP      PF    Y +  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  573 SPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRNVTW 707

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot

BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKK1_9PHAE	5.190e-17	39.13	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JRL9_9PHAE	5.360e-17	39.13	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JBA7_9PHAE	5.370e-17	39.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	5.400e-17	39.13	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JB16_9PHAE	1.880e-16	38.85	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVR5_9PHAE	1.920e-16	40.50	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JV76_9PHAE	2.200e-16	38.13	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5L3Y0_9PHAE	2.410e-16	38.41	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KWE4_9PHAE	6.510e-16	37.68	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K622_9PHAE	8.580e-16	38.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 22..111 e-value: 3.2E-7 score: 31.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..93 score: 9.339
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 26..96

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig93044	contig	H-elongata_contig93044:111..626 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig93044.16754.1	mRNA_H-elongata_contig93044.16754.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig93044 111..626 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig93044.16754.1 ID=prot_H-elongata_contig93044.16754.1|Name=mRNA_H-elongata_contig93044.16754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
MVKELERVERTVDPKDVNIIILGGLTPQYNGVVERALGLLRDKTVALLRG
VMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIP
PFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILN
RQAVTWHPPTGGRGTRPFPHHP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf