prot_H-elongata_contig92607.16714.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig92607.16714.1
Unique Nameprot_H-elongata_contig92607.16714.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length101
Homology
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BLAST of mRNA_H-elongata_contig92607.16714.1 vs. uniprot
Match: D7FGR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 9.650e-24
Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 0 
Query:    2 KFTVREPSEGSKNNMYYRTKTLKSQLLVFTLCLALVLDGCQLHFGVLAQDLKLSEAEARALLRELASLFLLSIGCTVNKTMAQLKLPLVFPRSRKAR 98
            KF+V E         Y RTKTLK+QL+V  LCLALVL+GC+L  GVLA+D +LS AEAR++LREL        GCT   T A LKLPL FPRSRKAR
Sbjct:  368 KFSVCEKKGAGGTANYVRTKTLKNQLVVHALCLALVLEGCRLEIGVLAEDFRLSTAEARSMLREL--------GCTATNTSAHLKLPLTFPRSRKAR 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92607.16714.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGR9_ECTSI9.650e-2458.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009668RNA polymerase I associated factor, A49-likePFAMPF06870RNA_pol_I_A49coord: 1..98
e-value: 2.7E-14
score: 52.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..49
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 39..49
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 27..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..100
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..26
NoneNo IPR availableTMHMMTMhelixcoord: 69..91
NoneNo IPR availableTMHMMTMhelixcoord: 27..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92607contigH-elongata_contig92607:289..1109 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92607.16714.1mRNA_H-elongata_contig92607.16714.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig92607 289..1109 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig92607.16714.1 ID=prot_H-elongata_contig92607.16714.1|Name=mRNA_H-elongata_contig92607.16714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
KKFTVREPSEGSKNNMYYRTKTLKSQLLVFTLCLALVLDGCQLHFGVLAQ
DLKLSEAEARALLRELASLFLLSIGCTVNKTMAQLKLPLVFPRSRKARNN
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009668RNA_pol-assoc_fac_A49-like