prot_H-elongata_contig92537.16706.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig92537.16706.1
Unique Nameprot_H-elongata_contig92537.16706.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length160
Homology
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 147 bits (370), Expect = 2.100e-39
Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 0
Query:    2 VVIQQKRSDGETEGMSLHFSQGIVDAT---LSEVN-RPSIIEDGYIIFGR--------------TGSGTKRQAKVMT----DKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRDSPNHGTVRL 159
            V + Q+ +D  TEG+S+H+ + +V+     LS ++ R   ++D ++IFG                G G  R +K  T    + ++AP KRHK+DPN PRGYISAFNFFVKD+RP+YVQ+  NAQG SL+HNNEINK+LG+ WK ATE+EKK YEEK+T DK RY +      P  G  R+
Sbjct:  141 VAVHQRCADEATEGLSVHYFRTMVEDRHLGLSSIHDRQDNVQDAFVIFGTHSRHPVRFRQHTGALGHGRSRYSKPQTRVAYESATAP-KRHKKDPNRPRGYISAFNFFVKDKRPTYVQSRPNAQGHSLEHNNEINKMLGKVWKTATEQEKKTYEEKATADKVRYLKEMSAYRPPEGYERI 319          
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.730e-27
Identity = 66/164 (40.24%), Postives = 97/164 (59.15%), Query Frame = 0
Query:    2 VVIQQKRSDGETEGMSLHFSQ-----GIVDATLSEVNRPSIIEDGYIIFGRTGSGTKR----------------QAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYF 144
            V + Q+ SDG T+G++   S      G+V     E+   S+ +D ++IF    SG+ R                +A+ M  K ++P +R ++DPN PRGY+SAFNFFVKD+R +YV++   AQG S  +NNE+NK+LG+AWK  T EEK  Y+ +S +DK RY 
Sbjct:  139 VSVHQRSSDGVTDGVAFQHSLVNGDGGLVSTAKEEMYHNSV-QDAFVIFNTHPSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRD---AQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYL 298          
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.420e-27
Identity = 68/178 (38.20%), Postives = 103/178 (57.87%), Query Frame = 0
Query:    2 VVIQQKRSDGETEGMSLHFS----QGIVDATLSEVNRPSIIEDGYIIFGRTGSGTKR---QAKVMTD-------------KSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRDSPNHGTVRL 159
            V + Q+ +DG T+G++   S     G + +T  E    S ++D ++IF    SG+ R    ++ +T              K ++P KR ++DPN PRGY+SAFNFFVKD+R +YV++   AQG S  +NNE+NK+LG+AWK  T EEK  Y+ +S +DK RY +     +P  G  R+
Sbjct:  202 VSVHQRSADGATDGVAFQHSLVSGDGGLVSTAKEEMYHSSVQDAFVIFNTHPSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRD---AQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLKEVAEYTPPVGGARI 376          
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A167JA28_PHYB8 (HMG box domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167JA28_PHYB8)

HSP 1 Score: 60.1 bits (144), Expect = 7.210e-9
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 0
Query:   47 RTGSGTKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRDSPNHG 155
            +  S TKR +KV+ D      +R K+DP+ P+  +SA+ FF +D+R    +N  +A         +I KILG  WK  T+ +KK Y +K+ +DK+RY + +   +  H 
Sbjct:    3 KESSKTKRTSKVVDD---GKKRRTKKDPSAPKRGLSAYMFFSQDQRHVVKENNPDASF------GQIGKILGERWKKMTDADKKPYNQKAELDKKRYEDEKAIAAEKHS 102          
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: A0A5C5G4Q3_9BASI (High mobility group box domain-containing protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G4Q3_9BASI)

HSP 1 Score: 53.1 bits (126), Expect = 3.610e-6
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0
Query:   54 RQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRY 143
            +++K  + K++A +K  K+DPN P+  +SA+  F +D R    +   +          EI K+LG  WK ATE +KK YEEK+  DK RY
Sbjct:    3 KESKTRSGKATAAAK-PKKDPNAPKRPLSAYMHFSQDMRSVVKEENPDVTF------GEIGKLLGVKWKEATENDKKPYEEKAKADKERY 85          
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: W7APU7_PLAVN (High mobility group protein B2, putative n=8 Tax=Plasmodium TaxID=5820 RepID=W7APU7_PLAVN)

HSP 1 Score: 49.7 bits (117), Expect = 5.590e-5
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 0
Query:   52 TKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRY 143
            TK Q KV+  ++    K+ K+DP  P+  +SA+ F+VKD+R   +Q          Q    + K++G AW   T  +K  YE+K+ +DK RY
Sbjct:    3 TKTQKKVIKKQN----KKKKKDPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQ----VGKLIGEAWGQLTPAQKAPYEKKAELDKVRY 86          
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Match: Q7R8Z3_PLAYO (High mobility group protein n=5 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=Q7R8Z3_PLAYO)

HSP 1 Score: 49.7 bits (117), Expect = 9.820e-5
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 0
Query:   52 TKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQNAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRY 143
            TK Q KV+  ++    K+ K+DP  P+  +SA+ F+VKD+R   +Q          Q    + K++G AW   T  +K  YE+K+ +DK RY
Sbjct:   31 TKTQKKVIKKQN----KKKKKDPLAPKRALSAYMFYVKDKRLEIIQERPELAKEVAQ----VGKLIGEAWGQLTPAQKAPYEKKAELDKVRY 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92537.16706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2Z4MTA2_SACJA2.100e-3946.67HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
D7G5V4_ECTSI1.730e-2740.24HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JSJ1_9PHAE8.420e-2738.20HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A167JA28_PHYB87.210e-933.94HMG box domain-containing protein n=1 Tax=Phycomyc... [more]
A0A5C5G4Q3_9BASI3.610e-637.78High mobility group box domain-containing protein ... [more]
W7APU7_PLAVN5.590e-534.78High mobility group protein B2, putative n=8 Tax=P... [more]
Q7R8Z3_PLAYO9.820e-534.78High mobility group protein n=5 Tax=Plasmodium (Vi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 76..152
e-value: 4.2E-11
score: 52.9
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 74..143
e-value: 4.4E-11
score: 43.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 77..143
score: 11.786
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 57..147
e-value: 7.4E-17
score: 63.4
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 64..145
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 63..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92537contigH-elongata_contig92537:6..1067 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92537.16706.1mRNA_H-elongata_contig92537.16706.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig92537 6..1067 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig92537.16706.1 ID=prot_H-elongata_contig92537.16706.1|Name=mRNA_H-elongata_contig92537.16706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
QVVIQQKRSDGETEGMSLHFSQGIVDATLSEVNRPSIIEDGYIIFGRTGS
GTKRQAKVMTDKSSAPSKRHKRDPNHPRGYISAFNFFVKDRRPSYVQNGQ
NAQGRSLQHNNEINKILGRAWKNATEEEKKIYEEKSTIDKRRYFEVRCRD
SPNHGTVRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf