prot_H-elongata_contig91701.16629.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig91701.16629.1
Unique Nameprot_H-elongata_contig91701.16629.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length165
Homology
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.560e-22
Identity = 55/80 (68.75%), Postives = 59/80 (73.75%), Query Frame = 0
Query:   89 RLLLRTGAVVRPPRLQPSGPVTRDMLEQQELGQARAYRERAVLRADMEAFLEENRG-----AVFADFVRWYRPDCWKVGT 163
            R LL +GA VRPPRLQ SGPVT DML+QQ LGQA AYR R VL ADM AF  EN G     AVFADFVRWYRP+CW+  T
Sbjct: 1236 RRLLCSGAAVRPPRLQESGPVTEDMLKQQTLGQAPAYRGREVLLADMTAFRAENDGGDRDAAVFADFVRWYRPECWQETT 1315          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.730e-22
Identity = 54/80 (67.50%), Postives = 57/80 (71.25%), Query Frame = 0
Query:   89 RLLLRTGAVVRPPRLQPSGPVTRDMLEQQELGQARAYRERAVLRADMEAFLEENRG-----AVFADFVRWYRPDCWKVGT 163
            R LL +GA VRPPRLQ  GPVT DML QQ LGQA AYR R VL ADM AF  EN G     AVFADFVRWYRP+CW+  T
Sbjct: 1228 RRLLCSGAAVRPPRLQECGPVTEDMLRQQTLGQAAAYRGREVLLADMTAFRSENGGGDGDAAVFADFVRWYRPECWQEAT 1307          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A8J4YWM0_9CHEL (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4YWM0_9CHEL)

HSP 1 Score: 63.5 bits (153), Expect = 1.010e-8
Identity = 59/186 (31.72%), Postives = 85/186 (45.70%), Query Frame = 0
Query:    2 YPDTRMCLVWQKLQMLNCC----RVEEQDTI-VTSAGVVAGAAKTSGESAEE----TIPGGTGESLQRAGTDVSTSSTPSVAAAVAAMECSGLSEPRL--------LLRTGAVVRPPRLQPSGPVTRDMLEQQ-----ELG------QARAYRERAVLRADMEAFLEENRGAVFADFVRWYRPDCW 159
            YP+ + C+++QKLQMLNCC    +  EQ T   TS   V  +  TS +S  E    T    +GE  +++  D  +   P   + V     S + E RL        L  +   +  P  Q   P+T D+LE+      +LG      Q RA  +   L++DME+F   N  +   DFVRWY P  W
Sbjct:   53 YPNLKYCILYQKLQMLNCCILRKKAREQPTSNETSQASVDESYSTSSDSEAEDEDVTFYECSGEVSEQSDADFKSKGEPCEGSNVFQDSLSTIPEARLRKCGDLKLLNDSKCPIFIPITQEPAPMTEDLLEEHAQVLLQLGTDNEGSQLRARMQSTCLKSDMESFKAANPNSTLEDFVRWYSPRDW 238          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A2J6KB90_LACSA (Rab3 GTPase-activating protein catalytic subunit n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KB90_LACSA)

HSP 1 Score: 60.1 bits (144), Expect = 1.670e-7
Identity = 49/162 (30.25%), Postives = 75/162 (46.30%), Query Frame = 0
Query:    3 PDTRMCLVWQKLQMLNCC-RVEEQDTIVTSAGVVAGAAKTSGESAEETIPGGTGESLQRAGTDVSTSSTPSVAAAVAAMECSGLSEPRLLLRTGAVVRPPRLQPSGPVTRDMLEQQE---LGQARAYRERAVLRADMEAFLEENRGAVFADFVRWYRPDCWK 160
            PD   CL++Q+LQ++NCC   +++  I TS+ +         ES       G+GES+ R G +                EC  L+    LL TG  V  P +Q    +T D++++ E   L         + L +DM+AF   N G +  DFVRW+ P  W+
Sbjct:  301 PDLNCCLLYQQLQVINCCISRKKRRAIATSSSL---------ESVMMYAKVGSGESVVRLGAE---------------KECENLT----LLETGEPVYAPVMQEEPLLTEDLVKETEEFILRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWE 434          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A251UTT5_HELAN (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UTT5_HELAN)

HSP 1 Score: 59.7 bits (143), Expect = 2.270e-7
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 0
Query:    3 PDTRMCLVWQKLQMLNCCR---------VEEQDTIVTSAGVVAGAAKTSGESAEETIPGGTGESLQRAGTDVSTSSTPSVAAAVAAMECSGLSEPRLLLRTGAVVRPPRLQPSGPVTRDMLEQQE---LGQARAYRERAVLRADMEAFLEENRGAVFADFVRWYRPDCW 159
            PD   CL++Q++Q++NCC           E  D+++  A +    A ++GE+A       +GE + R G               AA +C  L+    +L TG  V  P +Q    +T D++++ E   L         + L +DM+AF   N G +  DFVRW+ P  W
Sbjct:  290 PDLNCCLLYQQMQVINCCISRKNRRAIVTESLDSVLKQANINDDMAPSNGETALMYARVSSGELVLRLG---------------AATQCENLT----MLETGEPVYAPVMQEQPLLTEDLVKETEEFILRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDW 439          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A103XY86_CYNCS (Rab3 GTPase-activating protein catalytic subunit n=5 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XY86_CYNCS)

HSP 1 Score: 59.3 bits (142), Expect = 3.060e-7
Identity = 53/162 (32.72%), Postives = 75/162 (46.30%), Query Frame = 0
Query:    3 PDTRMCLVWQKLQMLNCC--RVEEQDTIVTSAGVVAGAAKTSGESAEETIPGGTGESLQRAGTDVSTSSTPSVAAAVAAMECSGLSEPRLLLRTGAVVRPPRLQPSGPVTRDMLEQQE---LGQARAYRERAVLRADMEAFLEENRGAVFADFVRWYRPDCW 159
            PD   CL++Q+LQ++NCC  R   +     S   V   A  +GE+A E+       SL  A      SS   V    AA +C  L+    LL TG  V  P +Q    +T D++++ E   L         + L +DM+AF   N G +  DFVRW+ P  W
Sbjct:  289 PDLNCCLLYQQLQVINCCISRKHRRAVATESLDSVLKQASINGETASES-------SLMYA----RVSSGQLVLRLGAAKQCENLT----LLETGEPVYAPVMQEEPLLTEDLVKETEEFILRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDW 435          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A673ALI7_9TELE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673ALI7_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 3.200e-7
Identity = 57/181 (31.49%), Postives = 81/181 (44.75%), Query Frame = 0
Query:    3 PDTRMCLVWQKLQMLNCC----RVEEQDTIVTSAGVVAGAAKTSGESAEETIPGGTGESLQRAGTDV--STSSTPSVAAAVAAMECSGL----------SEPRLLLRTGAVVRPPRLQPSGPVTRDMLEQQ-----ELGQA------RAYRERAVLRADMEAFLEENRGAVFADFVRWYRP 156
            PD R CL++QKLQMLNCC    R  ++   +   G  +  A T+  S  E  PG + +S   +  +     S    +  +    E +G           S    LL +   +  P  Q   P+T D+LE+Q     +LG +      RA  + A L +DME+F   N G V  DFVRWY P
Sbjct:  452 PDLRCCLLFQKLQMLNCCIERKRARDEAQKMKDGGKESTRASTASTSTREVSPGKSWDSWSDSDDEFFECLSDQGEMDGSHTEGEKNGSKTKPDGRLHPSNNMTLLNSTEPLYIPITQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCVLEDFVRWYSP 632          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A673APC3_9TELE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673APC3_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-7
Identity = 57/181 (31.49%), Postives = 81/181 (44.75%), Query Frame = 0
Query:    3 PDTRMCLVWQKLQMLNCC----RVEEQDTIVTSAGVVAGAAKTSGESAEETIPGGTGESLQRAGTDV--STSSTPSVAAAVAAMECSGL----------SEPRLLLRTGAVVRPPRLQPSGPVTRDMLEQQ-----ELGQA------RAYRERAVLRADMEAFLEENRGAVFADFVRWYRP 156
            PD R CL++QKLQMLNCC    R  ++   +   G  +  A T+  S  E  PG + +S   +  +     S    +  +    E +G           S    LL +   +  P  Q   P+T D+LE+Q     +LG +      RA  + A L +DME+F   N G V  DFVRWY P
Sbjct:  496 PDLRCCLLFQKLQMLNCCIERKRARDEAQKMKDGGKESTRASTASTSTREVSPGKSWDSWSDSDDEFFECLSDQGEMDGSHTEGEKNGSKTKPDGRLHPSNNMTLLNSTEPLYIPITQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCVLEDFVRWYSP 676          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: A0A673AL99_9TELE (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AL99_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-7
Identity = 57/181 (31.49%), Postives = 81/181 (44.75%), Query Frame = 0
Query:    3 PDTRMCLVWQKLQMLNCC----RVEEQDTIVTSAGVVAGAAKTSGESAEETIPGGTGESLQRAGTDV--STSSTPSVAAAVAAMECSGL----------SEPRLLLRTGAVVRPPRLQPSGPVTRDMLEQQ-----ELGQA------RAYRERAVLRADMEAFLEENRGAVFADFVRWYRP 156
            PD R CL++QKLQMLNCC    R  ++   +   G  +  A T+  S  E  PG + +S   +  +     S    +  +    E +G           S    LL +   +  P  Q   P+T D+LE+Q     +LG +      RA  + A L +DME+F   N G V  DFVRWY P
Sbjct:  501 PDLRCCLLFQKLQMLNCCIERKRARDEAQKMKDGGKESTRASTASTSTREVSPGKSWDSWSDSDDEFFECLSDQGEMDGSHTEGEKNGSKTKPDGRLHPSNNMTLLNSTEPLYIPITQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCVLEDFVRWYSP 681          
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Match: UPI00117C5BBB (rab3 GTPase-activating protein catalytic subunit isoform X1 n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=UPI00117C5BBB)

HSP 1 Score: 59.3 bits (142), Expect = 3.250e-7
Identity = 57/181 (31.49%), Postives = 81/181 (44.75%), Query Frame = 0
Query:    3 PDTRMCLVWQKLQMLNCC----RVEEQDTIVTSAGVVAGAAKTSGESAEETIPGGTGESLQRAGTDV--STSSTPSVAAAVAAMECSGL----------SEPRLLLRTGAVVRPPRLQPSGPVTRDMLEQQ-----ELGQA------RAYRERAVLRADMEAFLEENRGAVFADFVRWYRP 156
            PD R CL++QKLQMLNCC    R  ++   +   G  +  A T+  S  E  PG + +S   +  +     S    +  +    E +G           S    LL +   +  P  Q   P+T D+LE+Q     +LG +      RA  + A L +DME+F   N G V  DFVRWY P
Sbjct:  514 PDLRCCLLFQKLQMLNCCIERKRARDEAQKMKDGGKESTRASTASTSTREVSPGKSWDSWSDSDDEFFECLSDQGEMDGSHTEGEKNGSKTKPDGRLHPSNNMTLLNSTEPLYIPITQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCVLEDFVRWYSP 694          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91701.16629.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCY7_9PHAE2.560e-2268.75Rab3 GTPase-activating protein catalytic subunit n... [more]
D8LFM1_ECTSI4.730e-2267.50Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A8J4YWM0_9CHEL1.010e-831.72Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A2J6KB90_LACSA1.670e-730.25Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A251UTT5_HELAN2.270e-728.40Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A103XY86_CYNCS3.060e-732.72Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A673ALI7_9TELE3.200e-731.49Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A673APC3_9TELE3.240e-731.49Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A673AL99_9TELE3.240e-731.49Rab3 GTPase-activating protein catalytic subunit n... [more]
UPI00117C5BBB3.250e-731.49rab3 GTPase-activating protein catalytic subunit i... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026147Rab3 GTPase-activating protein catalytic subunitPFAMPF13890Rab3-GTPase_catcoord: 88..159
e-value: 1.5E-12
score: 47.4
IPR026147Rab3 GTPase-activating protein catalytic subunitPANTHERPTHR21422FAMILY NOT NAMEDcoord: 3..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91701contigH-elongata_contig91701:560..1885 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91701.16629.1mRNA_H-elongata_contig91701.16629.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig91701 560..1885 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig91701.16629.1 ID=prot_H-elongata_contig91701.16629.1|Name=mRNA_H-elongata_contig91701.16629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MYPDTRMCLVWQKLQMLNCCRVEEQDTIVTSAGVVAGAAKTSGESAEETI
PGGTGESLQRAGTDVSTSSTPSVAAAVAAMECSGLSEPRLLLRTGAVVRP
PRLQPSGPVTRDMLEQQELGQARAYRERAVLRADMEAFLEENRGAVFADF
VRWYRPDCWKVGTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026147Rab3-GAP_cat_su